Human Gene URI1 (ENST00000392271.6_8) from GENCODE V47lift37
  Description: URI1 prefoldin like chaperone, transcript variant 1 (from RefSeq NM_003796.3)
Gencode Transcript: ENST00000392271.6_8
Gencode Gene: ENSG00000105176.18_16
Transcript (Including UTRs)
   Position: hg19 chr19:30,433,146-30,507,519 Size: 74,374 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr19:30,433,455-30,505,976 Size: 72,522 Coding Exon Count: 11 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:30,433,146-30,507,519)mRNA (may differ from genome)Protein (535 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RMP_HUMAN
DESCRIPTION: RecName: Full=Unconventional prefoldin RPB5 interactor 1; AltName: Full=Protein NNX3; AltName: Full=Protein phosphatase 1 regulatory subunit 19; AltName: Full=RNA polymerase II subunit 5-mediating protein; Short=RPB5-mediating protein;
FUNCTION: Involved in gene transcription regulation. Acts as a transcriptional repressor in concert with the corepressor UXT to regulate androgen receptor (AR) transcription. May act as a tumor suppressor to repress AR-mediated gene transcription and to inhibit anchorage-independent growth in prostate cancer cells. Required for cell survival in ovarian cancer cells. Together with UXT, associates with chromatin to the NKX3-1 promoter region. Antagonizes transcriptional modulation via hepatitis B virus X protein.
FUNCTION: Plays a central role in maintaining S6K1 signaling and BAD phosphorylation under normal growth conditions thereby protecting cells from potential deleterious effects of sustained S6K1 signaling. The URI1-PPP1CC complex acts as a central component of a negative feedback mechanism that counteracts excessive S6K1 survival signaling to BAD in response to growth factors. Mediates inhibition of PPP1CC phosphatase activity at mitochondria. Coordinates the regulation of nutrient-sensitive gene expression availability in a mTOR-dependent manner. Seems to be a scaffolding protein able to assemble a prefoldin-like complex that contains PFDs and proteins with roles in transcription and ubiquitination.
SUBUNIT: Homodimer. Component of the URI complex that contains PFDN2, POLR2E/RPB5, RUVBL2, RUVBL1 and URI1. Interacts with PPP1CC; the interaction is phosphorylation-dependent and occurs in a growth factor-dependent manner. Interacts with PFDN2, PFDN4 and STAP1; the interactions are phosphorylation-dependent and occurs in a growth-dependent manner in the mitochondrion. Interacts (via the middle C-terminus region) with GTF2F1 and GTF2F2. Interacts with DMAP1, POLR2E/RPB5 and UXT.
INTERACTION: P35269:GTF2F1; NbExp=3; IntAct=EBI-357067, EBI-457886; P13984:GTF2F2; NbExp=4; IntAct=EBI-357067, EBI-1030560; P19388:POLR2E; NbExp=2; IntAct=EBI-357067, EBI-395189; P36873:PPP1CC; NbExp=5; IntAct=EBI-357067, EBI-356283;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Mitochondrion. Cell projection, dendrite (By similarity). Note=Colocalizes with PFDN2, PFDN4, PPP1CC, RPS6KB1 and STAP1 at mitochondrion.
TISSUE SPECIFICITY: Ubiquitous. Expressed in ovarian cancers (at protein level). Expressed strongly in skeletal muscle. Expressed weakly in brain, heart, pancreas and in prostate epithelial cells.
PTM: Phosphorylated. Phosphorylation occurs essentially on serine residues. Phosphorylation occurs in response to androgen treatment in prostate cancer cells in a mTOR-dependent manner. Phosphorylated; hyperhosphorylated in mitochondria in a mTORC- dependent signaling pathway. Phosphorylated at Ser-372 by RPS6KB1 in a growth factor- and rapamycin-dependent manner. S6K1-mediated mitochondrial phosphorylation at Ser-372 disrupts the URI1-PPP1CC complex in the mitochondrion, releaves PPP1CC phosphatase inhibition activity and hence engages a negative feedback diminishing RPS6KB1 kinase activity and preventing sustained S6K1- dependent signaling.
SIMILARITY: Belongs to the RNA polymerase II subunit 5-mediating protein family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: URI1
Diseases sorted by gene-association score: hepatocellular carcinoma (2), prostate cancer (2), neurodegeneration with brain iron accumulation 4 (2), tetanus neonatorum (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.33 RPKM in Testis
Total median expression: 614.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -183.40309-0.594 Picture PostScript Text
3' UTR -318.101543-0.206 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009053 - Prefoldin
IPR004127 - Prefoldin_subunit

Pfam Domains:
PF02996 - Prefoldin subunit
PF12927 - Domain of unknown function (DUF3835)
PF13758 - Prefoldin subunit

SCOP Domains:
48371 - ARM repeat
46579 - Prefoldin

ModBase Predicted Comparative 3D Structure on O94763
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001106 RNA polymerase II transcription corepressor activity
GO:0003682 chromatin binding
GO:0004864 protein phosphatase inhibitor activity
GO:0005515 protein binding
GO:0019212 phosphatase inhibitor activity
GO:0051219 phosphoprotein binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001558 regulation of cell growth
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0009615 response to virus
GO:0010923 negative regulation of phosphatase activity
GO:0032515 negative regulation of phosphoprotein phosphatase activity
GO:0071363 cellular response to growth factor stimulus
GO:0071383 cellular response to steroid hormone stimulus
GO:2001243 negative regulation of intrinsic apoptotic signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005665 DNA-directed RNA polymerase II, core complex
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0030425 dendrite
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  LF207626 - JP 2014500723-A/15129: Polycomb-Associated Non-Coding RNAs.
BC026184 - Homo sapiens chromosome 19 open reading frame 2, mRNA (cDNA clone IMAGE:4821488), partial cds.
AK226173 - Homo sapiens mRNA for RPB5-mediating protein isoform a variant, clone: bm03840.
JD186852 - Sequence 167876 from Patent EP1572962.
AF091095 - Homo sapiens NNX3 (C19orf2) mRNA, complete cds.
AK292170 - Homo sapiens cDNA FLJ78622 complete cds.
BC067259 - Homo sapiens chromosome 19 open reading frame 2, mRNA (cDNA clone MGC:74705 IMAGE:6500727), complete cds.
AK314313 - Homo sapiens cDNA, FLJ95071.
AK001437 - Homo sapiens cDNA FLJ10575 fis, clone NT2RP2003295, highly similar to RNA polymerase II subunit 5-mediating protein.
LF385410 - JP 2014500723-A/192913: Polycomb-Associated Non-Coding RNAs.
LF367637 - JP 2014500723-A/175140: Polycomb-Associated Non-Coding RNAs.
AB385084 - Synthetic construct DNA, clone: pF1KB5339, Homo sapiens C19orf2 gene for RNA polymerase II subunit 5-mediating protein, complete cds, without stop codon, in Flexi system.
JD540229 - Sequence 521253 from Patent EP1572962.
KJ904609 - Synthetic construct Homo sapiens clone ccsbBroadEn_14003 URI1-like gene, encodes complete protein.
AB006572 - Homo sapiens RMP mRNA for RPB5 meidating protein, complete cds.
LF367592 - JP 2014500723-A/175095: Polycomb-Associated Non-Coding RNAs.
BC014933 - Homo sapiens chromosome 19 open reading frame 2, mRNA (cDNA clone IMAGE:3920255), partial cds.
LF367590 - JP 2014500723-A/175093: Polycomb-Associated Non-Coding RNAs.
LF367589 - JP 2014500723-A/175092: Polycomb-Associated Non-Coding RNAs.
LF367586 - JP 2014500723-A/175089: Polycomb-Associated Non-Coding RNAs.
LF367585 - JP 2014500723-A/175088: Polycomb-Associated Non-Coding RNAs.
LF367583 - JP 2014500723-A/175086: Polycomb-Associated Non-Coding RNAs.
HQ234307 - Homo sapiens clone c19orf2_E10-3'-E3 C19ORF2 mRNA, partial sequence.
JD156908 - Sequence 137932 from Patent EP1572962.
JD356890 - Sequence 337914 from Patent EP1572962.
JD328477 - Sequence 309501 from Patent EP1572962.
LF367579 - JP 2014500723-A/175082: Polycomb-Associated Non-Coding RNAs.
MA620987 - JP 2018138019-A/192913: Polycomb-Associated Non-Coding RNAs.
MA603214 - JP 2018138019-A/175140: Polycomb-Associated Non-Coding RNAs.
MA603169 - JP 2018138019-A/175095: Polycomb-Associated Non-Coding RNAs.
MA603167 - JP 2018138019-A/175093: Polycomb-Associated Non-Coding RNAs.
MA603166 - JP 2018138019-A/175092: Polycomb-Associated Non-Coding RNAs.
MA603163 - JP 2018138019-A/175089: Polycomb-Associated Non-Coding RNAs.
MA603162 - JP 2018138019-A/175088: Polycomb-Associated Non-Coding RNAs.
MA603160 - JP 2018138019-A/175086: Polycomb-Associated Non-Coding RNAs.
MA603156 - JP 2018138019-A/175082: Polycomb-Associated Non-Coding RNAs.
MA443203 - JP 2018138019-A/15129: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K805, C19orf2, ENST00000392271.1, ENST00000392271.2, ENST00000392271.3, ENST00000392271.4, ENST00000392271.5, H7BY42, NM_003796, NNX3, O94763, PPP1R19, Q8TC23, Q9UNU3, RMP, RMP_HUMAN, uc318uyu.1, uc318uyu.2, URI
UCSC ID: ENST00000392271.6_8
RefSeq Accession: NM_003796.3
Protein: O94763 (aka RMP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.