Human Gene ULK1 (ENST00000321867.6_5) from GENCODE V47lift37
  Description: unc-51 like autophagy activating kinase 1 (from RefSeq NM_003565.4)
Gencode Transcript: ENST00000321867.6_5
Gencode Gene: ENSG00000177169.10_9
Transcript (Including UTRs)
   Position: hg19 chr12:132,379,167-132,407,695 Size: 28,529 Total Exon Count: 28 Strand: +
Coding Region
   Position: hg19 chr12:132,379,547-132,405,906 Size: 26,360 Coding Exon Count: 28 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:132,379,167-132,407,695)mRNA (may differ from genome)Protein (1050 aa)
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-  Comments and Description Text from UniProtKB
  ID: ULK1_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase ULK1; EC=2.7.11.1; AltName: Full=Autophagy-related protein 1 homolog; Short=ATG1; Short=hATG1; AltName: Full=Unc-51-like kinase 1;
FUNCTION: Serine/threonine-protein kinase involved in autophagy in response to starvation. Acts upstream of phosphatidylinositol 3- kinase PIK3C3 to regulate the formation of autophagophores, the precursors of autophagosomes. Part of regulatory feedback loops in autophagy: acts both as a downstream effector and negative regulator of mammalian target of rapamycin complex 1 (mTORC1) via interaction with RPTOR. Activated via phosphorylation by AMPK and also acts as a regulator of AMPK by mediating phosphorylation of AMPK subunits PRKAA1, PRKAB2 and PRKAG1, leading to negatively regulate AMPK activity. May phosphorylate ATG13/KIAA0652 and RPTOR; however such data need additional evidences. Plays a role early in neuronal differentiation and is required for granule cell axon formation.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SUBUNIT: Interacts with GABARAP and GABARAPL2. Interacts (via C- terminus) with ATG13/KIAA0652. Part of a complex consisting of ATG13/KIAA0652, ULK1 and RB1CC1. Associates with the mammalian target of rapamycin complex 1 (mTORC1) through an interaction with RPTOR; the association depends on nutrient conditions and is reduced during starvation. Interacts with FEZ1; SCOC interferes with FEZ1-binding.
INTERACTION: Q9H0R8:GABARAPL1; NbExp=2; IntAct=EBI-908831, EBI-746969; P60520:GABARAPL2; NbExp=3; IntAct=EBI-908831, EBI-720116; Q9GZQ8:MAP1LC3B; NbExp=2; IntAct=EBI-908831, EBI-373144; Q9BXW4:MAP1LC3C; NbExp=2; IntAct=EBI-908831, EBI-2603996; Q8TDY2:RB1CC1; NbExp=4; IntAct=EBI-908831, EBI-1047793;
SUBCELLULAR LOCATION: Cytoplasm, cytosol (By similarity). Preautophagosomal structure (By similarity). Note=Under starvation conditions, is localized to puncate structures primarily representing the isolation membrane that sequesters a portion of the cytoplasm resulting in the formation of an autophagosome (By similarity).
TISSUE SPECIFICITY: Ubiquitously expressed. Detected in the following adult tissues: skeletal muscle, heart, pancreas, brain, placenta, liver, kidney, and lung.
PTM: Autophosphorylated. Phosphorylated under nutrient-rich conditions; dephosphorylated during starvation or following treatment with rapamycin. Under nutrient sufficiency, phosphorylated by MTOR/mTOR, disrupting the interaction with AMPK and preventing activation of ULK1 (By similarity). In response to nutrient limitation, phosphorylated and activated by AMPK, leading to activate autophagy.
SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. APG1/unc-51/ULK1 subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=BAA34442.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 43.92 RPKM in Pituitary
Total median expression: 1100.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -212.40380-0.559 Picture PostScript Text
3' UTR -742.501789-0.415 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR016237 - Ser/Thr_kin_STPK_Ulk-1/2
IPR008271 - Ser/Thr_kinase_AS
IPR022708 - Ser/Thr_kinase_C

Pfam Domains:
PF00069 - Protein kinase domain
PF01163 - RIO1 family
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase
PF12063 - Domain of unknown function (DUF3543)

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on O75385
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0017137 Rab GTPase binding
GO:0042802 identical protein binding
GO:0044877 macromolecular complex binding
GO:0051020 GTPase binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0006914 autophagy
GO:0007165 signal transduction
GO:0007409 axonogenesis
GO:0008104 protein localization
GO:0016236 macroautophagy
GO:0016241 regulation of macroautophagy
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0018107 peptidyl-threonine phosphorylation
GO:0031102 neuron projection regeneration
GO:0031175 neuron projection development
GO:0031333 negative regulation of protein complex assembly
GO:0031669 cellular response to nutrient levels
GO:0042594 response to starvation
GO:0046777 protein autophosphorylation
GO:0048675 axon extension
GO:0075044 autophagy of host cells involved in interaction with symbiont
GO:2000786 positive regulation of autophagosome assembly

Cellular Component:
GO:0000407 pre-autophagosomal structure
GO:0005737 cytoplasm
GO:0005741 mitochondrial outer membrane
GO:0005776 autophagosome
GO:0005789 endoplasmic reticulum membrane
GO:0005829 cytosol
GO:0030424 axon
GO:0034045 pre-autophagosomal structure membrane
GO:0055037 recycling endosome
GO:0097629 extrinsic component of omegasome membrane
GO:0097632 extrinsic component of pre-autophagosomal structure membrane
GO:0097635 extrinsic component of autophagosome membrane
GO:1990316 ATG1/ULK1 kinase complex
GO:0032045 guanyl-nucleotide exchange factor complex


-  Descriptions from all associated GenBank mRNAs
  AF045458 - Homo sapiens serine/threonine kinase ULK1 (ULK1) mRNA, complete cds.
LF383998 - JP 2014500723-A/191501: Polycomb-Associated Non-Coding RNAs.
AB018265 - Homo sapiens KIAA0722 mRNA for KIAA0722 protein.
AB383965 - Synthetic construct DNA, clone: pF1KSDA0722, Homo sapiens ULK1 gene for serine/threonine-protein kinase ULK1, complete cds, without stop codon, in Flexi system.
BC111603 - Synthetic construct Homo sapiens clone IMAGE:40080552, MGC:133415 ULK1 protein (ULK1) mRNA, encodes complete protein.
MA619575 - JP 2018138019-A/191501: Polycomb-Associated Non-Coding RNAs.
LF359332 - JP 2014500723-A/166835: Polycomb-Associated Non-Coding RNAs.
LF359331 - JP 2014500723-A/166834: Polycomb-Associated Non-Coding RNAs.
MA594909 - JP 2018138019-A/166835: Polycomb-Associated Non-Coding RNAs.
MA594908 - JP 2018138019-A/166834: Polycomb-Associated Non-Coding RNAs.
LF359327 - JP 2014500723-A/166830: Polycomb-Associated Non-Coding RNAs.
LF359326 - JP 2014500723-A/166829: Polycomb-Associated Non-Coding RNAs.
LF359325 - JP 2014500723-A/166828: Polycomb-Associated Non-Coding RNAs.
LF359324 - JP 2014500723-A/166827: Polycomb-Associated Non-Coding RNAs.
LF359323 - JP 2014500723-A/166826: Polycomb-Associated Non-Coding RNAs.
AK128333 - Homo sapiens cDNA FLJ46475 fis, clone THYMU3024339.
AK095774 - Homo sapiens cDNA FLJ38455 fis, clone FEBRA2019711.
LF359321 - JP 2014500723-A/166824: Polycomb-Associated Non-Coding RNAs.
JD272298 - Sequence 253322 from Patent EP1572962.
JD199181 - Sequence 180205 from Patent EP1572962.
JD427799 - Sequence 408823 from Patent EP1572962.
JD231172 - Sequence 212196 from Patent EP1572962.
JD535607 - Sequence 516631 from Patent EP1572962.
JD484405 - Sequence 465429 from Patent EP1572962.
JD149562 - Sequence 130586 from Patent EP1572962.
JD159749 - Sequence 140773 from Patent EP1572962.
JD068669 - Sequence 49693 from Patent EP1572962.
JD492497 - Sequence 473521 from Patent EP1572962.
JD385080 - Sequence 366104 from Patent EP1572962.
JD372350 - Sequence 353374 from Patent EP1572962.
JD110620 - Sequence 91644 from Patent EP1572962.
JD224280 - Sequence 205304 from Patent EP1572962.
JD110144 - Sequence 91168 from Patent EP1572962.
JD083437 - Sequence 64461 from Patent EP1572962.
LF359320 - JP 2014500723-A/166823: Polycomb-Associated Non-Coding RNAs.
JD439052 - Sequence 420076 from Patent EP1572962.
JD298914 - Sequence 279938 from Patent EP1572962.
JD310619 - Sequence 291643 from Patent EP1572962.
JD394820 - Sequence 375844 from Patent EP1572962.
JD327488 - Sequence 308512 from Patent EP1572962.
JD233740 - Sequence 214764 from Patent EP1572962.
JD138718 - Sequence 119742 from Patent EP1572962.
JD143140 - Sequence 124164 from Patent EP1572962.
JD267781 - Sequence 248805 from Patent EP1572962.
JD317495 - Sequence 298519 from Patent EP1572962.
JD336320 - Sequence 317344 from Patent EP1572962.
JD226668 - Sequence 207692 from Patent EP1572962.
JD460315 - Sequence 441339 from Patent EP1572962.
JD116578 - Sequence 97602 from Patent EP1572962.
JD535118 - Sequence 516142 from Patent EP1572962.
JD455022 - Sequence 436046 from Patent EP1572962.
LF359319 - JP 2014500723-A/166822: Polycomb-Associated Non-Coding RNAs.
JD250101 - Sequence 231125 from Patent EP1572962.
MA594904 - JP 2018138019-A/166830: Polycomb-Associated Non-Coding RNAs.
MA594903 - JP 2018138019-A/166829: Polycomb-Associated Non-Coding RNAs.
MA594902 - JP 2018138019-A/166828: Polycomb-Associated Non-Coding RNAs.
MA594901 - JP 2018138019-A/166827: Polycomb-Associated Non-Coding RNAs.
MA594900 - JP 2018138019-A/166826: Polycomb-Associated Non-Coding RNAs.
MA594898 - JP 2018138019-A/166824: Polycomb-Associated Non-Coding RNAs.
MA594897 - JP 2018138019-A/166823: Polycomb-Associated Non-Coding RNAs.
MA594896 - JP 2018138019-A/166822: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O75385 (Reactome details) participates in the following event(s):

R-HSA-8948136 ULK1 Translocates to the mitochondria
R-HSA-8854759 TBC1D14 binds RAB11 and ULK1
R-HSA-5672011 p-AMPK:AMP binds the ULK complex
R-HSA-5672817 Active mTORC1 binds the ULK1 complex
R-HSA-5675790 mTORC1 dissociates from ULK complex
R-HSA-8876446 p-ULK1 phosphorylates DENND3
R-HSA-8948146 FUNDC1 is phosphorylated by ULK1 at Ser17
R-HSA-5665868 AMPK (complex) phosphorylates ULK1 (complex)
R-HSA-5672010 Active mTORC1 phosphorylates ULK1
R-HSA-5673768 p-AMPK:AMP phosphorylates Raptor in the mTORC1 complex
R-HSA-5679239 ULK complex translocates to the ER
R-HSA-5675868 ULK1 phosphorylates ATG13 and RB1CC1
R-HSA-1632857 ULK1 phosphorylates AMBRA1:Beclin-1 complex
R-HSA-5679205 ULK1 phosphorylates Beclin-1
R-HSA-8934903 Receptor Mediated Mitophagy
R-HSA-8854214 TBC/RABGAPs
R-HSA-1632852 Macroautophagy
R-HSA-5205647 Mitophagy
R-HSA-8876198 RAB GEFs exchange GTP for GDP on RABs
R-HSA-9007101 Rab regulation of trafficking
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000321867.1, ENST00000321867.2, ENST00000321867.3, ENST00000321867.4, ENST00000321867.5, KIAA0722 , NM_003565, O75385, Q9UQ28, uc317rdr.1, uc317rdr.2, ULK1 , ULK1_HUMAN
UCSC ID: ENST00000321867.6_5
RefSeq Accession: NM_003565.4
Protein: O75385 (aka ULK1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.