Human Gene UBE2NL (ENST00000618570.1_4) from GENCODE V47lift37

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Human Gene UBE2NL (ENST00000618570.1_4) from GENCODE V47lift37

Description: ubiquitin conjugating enzyme E2 N like (gene/pseudogene), transcript variant non-coding (from RefSeq NR_121210.1)
Gencode Transcript: ENST00000618570.1_4
Gencode Gene: ENSG00000276380.2_8
Transcript (Including UTRs)
Position: hg19 chrX:142,967,173-142,968,362 Size: 1,190 Total Exon Count: 1 Strand: +
Coding Region
Position: hg19 chrX:142,967,203-142,967,664 Size: 462 Coding Exon Count: 1

Page Index	Sequence and Links	Primers	CTD	Gene Alleles	Microarray Expression
RNA Structure	Other Species	mRNA Descriptions	Pathways	Other Names	Model Information
Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chrX:142,967,173-142,968,362)			mRNA (may differ from genome)		Protein (153 aa)
Gene Sorter	Genome Browser	Other Species FASTA	Gene interactions	Table Schema	BioGPS
Ensembl	Entrez Gene	ExonPrimer	GeneCards	HGNC	MGI
PubMed	BioGrid CRISPR DB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D000082 Acetaminophen

Common Gene Haplotype Alleles


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Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-7.70	30	-0.257	Picture	PostScript	Text
3' UTR	-170.70	698	-0.245	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	GU727624 - Homo sapiens epididymis tissue protein Li 174 mRNA, complete cds. JD512110 - Sequence 493134 from Patent EP1572962. JD202393 - Sequence 183417 from Patent EP1572962.

Biochemical and Signaling Pathways


	BioCyc Knowledge Library PWY-7511 - protein ubiquitination

Other Names for This Gene


	Alternate Gene Symbols: NR_121210, uc327rum.1, uc327rum.2 UCSC ID: ENST00000618570.1_4 RefSeq Accession: NR_121210.1

Gene Model Information


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Methods, Credits, and Use Restrictions


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