Human Gene UBASH3B (ENST00000284273.6_4) from GENCODE V47lift37
  Description: ubiquitin associated and SH3 domain containing B, transcript variant 1 (from RefSeq NM_032873.5)
Gencode Transcript: ENST00000284273.6_4
Gencode Gene: ENSG00000154127.10_7
Transcript (Including UTRs)
   Position: hg19 chr11:122,526,430-122,685,181 Size: 158,752 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr11:122,526,758-122,680,594 Size: 153,837 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:122,526,430-122,685,181)mRNA (may differ from genome)Protein (649 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UBS3B_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin-associated and SH3 domain-containing protein B; EC=3.1.3.48; AltName: Full=Cbl-interacting protein p70; AltName: Full=Suppressor of T-cell receptor signaling 1; Short=STS-1; AltName: Full=T-cell ubiquitin ligand 2; Short=TULA-2; AltName: Full=Tyrosine-protein phosphatase STS1/TULA2;
FUNCTION: Interferes with CBL-mediated down-regulation and degradation of receptor-type tyrosine kinases. Promotes accumulation of activated target receptors, such as T-cell receptors and EGFR, on the cell surface. Exhibits tyrosine phosphatase activity toward several substrates including EGFR, FAK, SYK, and ZAP70. Down-regulates proteins that are dually modified by both protein tyrosine phosphorylation and ubiquitination.
CATALYTIC ACTIVITY: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
SUBUNIT: Homodimer (By similarity). Interacts with CBL. Part of a complex containing CBL and activated EGFR. Interacts with ubiquitin and with mono-ubiquitinated proteins.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus (Potential).
SIMILARITY: Contains 1 SH3 domain.
SIMILARITY: Contains 1 UBA domain.
SEQUENCE CAUTION: Sequence=AAL16953.1; Type=Erroneous initiation; Sequence=BAB85545.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.43 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 85.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -172.70328-0.527 Picture PostScript Text
3' UTR -1227.904587-0.268 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013078 - His_Pase_superF_clade-1
IPR001452 - SH3_domain
IPR009060 - UBA-like
IPR000449 - UBA/transl_elong_EF1B_N
IPR015940 - UBA/transl_elong_EF1B_N_euk

Pfam Domains:
PF00018 - SH3 domain
PF00300 - Histidine phosphatase superfamily (branch 1)
PF00627 - UBA/TS-N domain
PF14604 - Variant SH3 domain

SCOP Domains:
46934 - UBA-like
50044 - SH3-domain
53254 - Phosphoglycerate mutase-like
55144 - LigT-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2CPW - NMR MuPIT 2E5K - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q8TF42
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004725 protein tyrosine phosphatase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0031625 ubiquitin protein ligase binding
GO:0042802 identical protein binding
GO:0051219 phosphoprotein binding

Biological Process:
GO:0006469 negative regulation of protein kinase activity
GO:0009968 negative regulation of signal transduction
GO:0030168 platelet activation
GO:0035335 peptidyl-tyrosine dephosphorylation
GO:0038063 collagen-activated tyrosine kinase receptor signaling pathway
GO:0038065 collagen-activated signaling pathway
GO:0043393 regulation of protein binding
GO:0045670 regulation of osteoclast differentiation
GO:0045671 negative regulation of osteoclast differentiation
GO:0045779 negative regulation of bone resorption
GO:0051279 regulation of release of sequestered calcium ion into cytosol
GO:0070527 platelet aggregation
GO:0090331 negative regulation of platelet aggregation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  MS997857 - Sequence 12 from Patent EP3159403.
AL833092 - Homo sapiens mRNA; cDNA DKFZp451N2419 (from clone DKFZp451N2419).
AK092011 - Homo sapiens cDNA FLJ34692 fis, clone MESAN2001154.
AK075203 - Homo sapiens cDNA FLJ90722 fis, clone PLACE1009067, highly similar to Nm23-phosphorylated unknown substrate (KIAA1959).
BC007541 - Homo sapiens ubiquitin associated and SH3 domain containing, B, mRNA (cDNA clone MGC:15437 IMAGE:2958242), complete cds.
AK222843 - Homo sapiens mRNA for Cbl-interacting protein Sts-1 variant, clone: HEP10990.
AK222846 - Homo sapiens mRNA for Cbl-interacting protein Sts-1 variant, clone: HEP10994.
AB075839 - Homo sapiens mRNA for KIAA1959 protein.
AB384334 - Synthetic construct DNA, clone: pF1KSDA1959, Homo sapiens STS1 gene for suppressor of T-cell receptor signaling 1, complete cds, without stop codon, in Flexi system.
CU675695 - Synthetic construct Homo sapiens gateway clone IMAGE:100023308 5' read STS-1 mRNA.
KJ895059 - Synthetic construct Homo sapiens clone ccsbBroadEn_04453 UBASH3B gene, encodes complete protein.
JD174558 - Sequence 155582 from Patent EP1572962.
JD477930 - Sequence 458954 from Patent EP1572962.
JD368655 - Sequence 349679 from Patent EP1572962.
JD290968 - Sequence 271992 from Patent EP1572962.
JD543507 - Sequence 524531 from Patent EP1572962.
JD137625 - Sequence 118649 from Patent EP1572962.
JD129041 - Sequence 110065 from Patent EP1572962.
JD383557 - Sequence 364581 from Patent EP1572962.
JD104622 - Sequence 85646 from Patent EP1572962.
JD543076 - Sequence 524100 from Patent EP1572962.
AF425252 - Homo sapiens nm23-phosphorylated unknown substrate mRNA, complete cds.
JD311144 - Sequence 292168 from Patent EP1572962.
JD174847 - Sequence 155871 from Patent EP1572962.
JD305647 - Sequence 286671 from Patent EP1572962.
JD512395 - Sequence 493419 from Patent EP1572962.
JD093998 - Sequence 75022 from Patent EP1572962.
JD334027 - Sequence 315051 from Patent EP1572962.
JD486390 - Sequence 467414 from Patent EP1572962.
JD250810 - Sequence 231834 from Patent EP1572962.
JD047028 - Sequence 28052 from Patent EP1572962.
JD479614 - Sequence 460638 from Patent EP1572962.
JD146987 - Sequence 128011 from Patent EP1572962.
JD552880 - Sequence 533904 from Patent EP1572962.
JD224877 - Sequence 205901 from Patent EP1572962.
JD553872 - Sequence 534896 from Patent EP1572962.
JD566439 - Sequence 547463 from Patent EP1572962.
JD066511 - Sequence 47535 from Patent EP1572962.
JD048310 - Sequence 29334 from Patent EP1572962.
JD420656 - Sequence 401680 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000284273.1, ENST00000284273.2, ENST00000284273.3, ENST00000284273.4, ENST00000284273.5, KIAA1959, NM_032873, Q53GT5, Q53GT8, Q8NBV7, Q8TF42, Q96IG9, Q96NZ2, STS1, UBS3B_HUMAN, uc317kem.1, uc317kem.2
UCSC ID: ENST00000284273.6_4
RefSeq Accession: NM_032873.5
Protein: Q8TF42 (aka UBS3B_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.