Human Gene TPO (ENST00000329066.9_4) from GENCODE V47lift37
  Description: thyroid peroxidase, transcript variant 6 (from RefSeq NM_001206744.2)
Gencode Transcript: ENST00000329066.9_4
Gencode Gene: ENSG00000115705.22_10
Transcript (Including UTRs)
   Position: hg19 chr2:1,417,235-1,547,445 Size: 130,211 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr2:1,418,181-1,546,246 Size: 128,066 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:1,417,235-1,547,445)mRNA (may differ from genome)Protein (933 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PERT_HUMAN
DESCRIPTION: RecName: Full=Thyroid peroxidase; Short=TPO; EC=1.11.1.8; Flags: Precursor;
FUNCTION: Iodination and coupling of the hormonogenic tyrosines in thyroglobulin to yield the thyroid hormones T(3) and T(4).
CATALYTIC ACTIVITY: 2 iodide + H(2)O(2) + 2 H(+) = 2 iodine + 2 H(2)O.
COFACTOR: Binds 1 calcium ion per heterodimer (By similarity).
COFACTOR: Binds 1 heme B (iron-protoporphyrin IX) group covalently per heterodimer (By similarity).
PATHWAY: Hormone biosynthesis; thyroid hormone biosynthesis.
SUBUNIT: Interacts with DUOX1, DUOX2 and CYBA.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 3: Cell surface.
PTM: Glycosylated.
PTM: Heme is covalently bound through a H(2)O(2)-dependent autocatalytic process. Heme insertion is important for the delivery of protein at the cell surface.
PTM: Cleaved in its N-terminal part.
DISEASE: Note=An alternative splicing in the thyroperoxidase mRNA can cause Graves' disease.
DISEASE: Defects in TPO are the cause of thyroid dyshormonogenesis 2A (TDH2A) [MIM:274500]. A disorder due to defective conversion of accumulated iodide to organically bound iodine. The iodide organification defect can be partial or complete.
SIMILARITY: Belongs to the peroxidase family. XPO subfamily.
SIMILARITY: Contains 1 EGF-like domain.
SIMILARITY: Contains 1 Sushi (CCP/SCR) domain.
WEB RESOURCE: Name=Wikipedia; Note=Thyroid peroxidase entry; URL="http://en.wikipedia.org/wiki/Thyroid_peroxidase";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TPO
Diseases sorted by gene-association score: thyroid dyshormonogenesis 2a* (1231), congenital hypothyroidism* (447), familial thyroid dyshormonogenesis* (247), congenital hypothyroidism, tpo-related* (100), goiter (40), endemic goiter (33), hypothyroidism (32), thyroiditis (28), hashimoto thyroiditis (24), graves' disease (21), multinodular goiter (19), postpartum depression (19), hyperthyroidism (18), nodular goiter (17), subacute thyroiditis (17), plummer's disease (17), iodine hypothyroidism (16), tracheopathia osteoplastica (16), thyroid cancer (15), nontoxic goiter (15), alpha/beta t-cell lymphopenia with gamma/delta t-cell expansion, severe cytomegalovirus infection, and autoimmunity (15), myxedema (14), follicular adenoma (13), toxic diffuse goiter (13), pendred syndrome (13), hyperthyroxinemia (12), thyroid gland disease (11), subacute lymphocytic thyroiditis (11), thyroid cancer, nonmedullary, 1 (10), addison's disease (10), premature menopause (10), papillary carcinoma (10), congenital rubella (10), autoimmune disease of endocrine system (9), celiac disease (9), pernicious anemia (9), goiter, multinodular 1, with or without sertoli-leydig cell tumors (8), turner syndrome (8), neonatal hypothyroidism (7), hypersensitivity reaction type ii disease (7), bamforth-lazarus syndrome (6), graves disease 1 (6), vitiligo-associated multiple autoimmune disease susceptibility 1 (5), limbic encephalitis (5), hypothyroidism, congenital, nongoitrous 4 (5), thyroid cancer, nonmedullary, 2 (5), diabetes mellitus, insulin-dependent (4), differentiated thyroid carcinoma (3), systemic scleroderma (3), hypersensitivity reaction disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 499.88 RPKM in Thyroid
Total median expression: 540.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -13.9084-0.165 Picture PostScript Text
3' UTR -352.701199-0.294 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016060 - Complement_control_module
IPR000742 - EG-like_dom
IPR001881 - EGF-like_Ca-bd
IPR013032 - EGF-like_CS
IPR000152 - EGF-type_Asp/Asn_hydroxyl_site
IPR018097 - EGF_Ca-bd_CS
IPR010255 - Haem_peroxidase
IPR002007 - Haem_peroxidase_animal
IPR019791 - Haem_peroxidase_animal_subgr
IPR000436 - Sushi_SCR_CCP

Pfam Domains:
PF00084 - Sushi repeat (SCR repeat)
PF03098 - Animal haem peroxidase
PF07645 - Calcium-binding EGF domain

SCOP Domains:
140959 - Indolic compounds 2,3-dioxygenase-like
48113 - Heme-dependent peroxidases
57535 - Complement control module/SCR domain
57196 - EGF/Laminin
57184 - Growth factor receptor domain

ModBase Predicted Comparative 3D Structure on P07202
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004447 iodide peroxidase activity
GO:0004601 peroxidase activity
GO:0005509 calcium ion binding
GO:0016491 oxidoreductase activity
GO:0020037 heme binding
GO:0046872 metal ion binding

Biological Process:
GO:0006590 thyroid hormone generation
GO:0006979 response to oxidative stress
GO:0035162 embryonic hemopoiesis
GO:0042446 hormone biosynthetic process
GO:0042744 hydrogen peroxide catabolic process
GO:0055114 oxidation-reduction process
GO:0098869 cellular oxidant detoxification

Cellular Component:
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK309868 - Homo sapiens cDNA, FLJ99909.
BC063107 - Homo sapiens thyroid peroxidase, mRNA (cDNA clone IMAGE:30325379), complete cds.
BC095448 - Homo sapiens thyroid peroxidase, mRNA (cDNA clone MGC:111197 IMAGE:30329791), complete cds.
M17755 - Homo sapiens thyroid peroxidase (TPO) mRNA, complete cds.
J02969 - Human thyroid peroxidase mRNA, clone phTPO-2.8.
J02970 - Human thyroid peroxidase mRNA, clone phTPO-2.4.
X17358 - Human mRNA from alternatively spliced TPO-2 gene for thyroid peroxidase (EC.1.11.1.7).
Y00406 - Human mRNA for thyroperoxidase.
CU687644 - Synthetic construct Homo sapiens gateway clone IMAGE:100022986 5' read TPO mRNA.
KJ901805 - Synthetic construct Homo sapiens clone ccsbBroadEn_11199 TPO gene, encodes complete protein.
KR711465 - Synthetic construct Homo sapiens clone CCSBHm_00023979 TPO (TPO) mRNA, encodes complete protein.
KR711466 - Synthetic construct Homo sapiens clone CCSBHm_00023980 TPO (TPO) mRNA, encodes complete protein.
AF439430 - Homo sapiens thyroid peroxidase mRNA, complete cds; alternatively spliced.
AF533528 - Homo sapiens thyroid peroxidase isoform 5 (TPO) mRNA, partial cds; alternatively spliced.
AB208960 - Homo sapiens mRNA for thyroid peroxidase isoform d variant protein.
JD459276 - Sequence 440300 from Patent EP1572962.
JD324355 - Sequence 305379 from Patent EP1572962.
AF533530 - Homo sapiens thyroid peroxidase isoform 2/3 (TPO) mRNA, partial cds; alternatively spliced.
AF533531 - Homo sapiens thyroid peroxidase isoform 2/4 (TPO) mRNA, partial cds; alternatively spliced.
AF533529 - Homo sapiens thyroid peroxidase isoform 6 (TPO) mRNA, partial cds; alternatively spliced.
M55702 - Human thyroperoxidase mRNA, 3' end, and the Graves' disease mutation.
AY136822 - Homo sapiens thyroid peroxidase isoform 4 (TPO) mRNA, partial cds; alternatively spliced.
JD100333 - Sequence 81357 from Patent EP1572962.
JD076364 - Sequence 57388 from Patent EP1572962.
JD147487 - Sequence 128511 from Patent EP1572962.
JD170390 - Sequence 151414 from Patent EP1572962.
JD227896 - Sequence 208920 from Patent EP1572962.
JD273737 - Sequence 254761 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-6241 - thyroid hormone biosynthesis

BioCarta from NCI Cancer Genome Anatomy Project
h_TPOPathway - TPO Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P07202 (Reactome details) participates in the following event(s):

R-HSA-209815 Tyrosine is monoiodinated
R-HSA-209840 Two DITs combine to form thyroxine
R-HSA-209925 DIT and MIT combine to form triiodothyronine
R-HSA-209973 Tyrosine is diiodinated
R-HSA-350901 Iodide is organified
R-HSA-209968 Thyroxine biosynthesis
R-HSA-209776 Amine-derived hormones
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000329066.1, ENST00000329066.2, ENST00000329066.3, ENST00000329066.4, ENST00000329066.5, ENST00000329066.6, ENST00000329066.7, ENST00000329066.8, NM_001206744, P07202, P09934, P09935, PERT_HUMAN, Q8IUL0, Q8NF94, Q8NF95, Q8NF96, Q8NF97, Q8TCI9, TPO , uc317sqm.1, uc317sqm.2
UCSC ID: ENST00000329066.9_4
RefSeq Accession: NM_001206744.2
Protein: P07202 (aka PERT_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.