Human Gene TNIK (ENST00000436636.7_12) from GENCODE V47lift37
  Description: TRAF2 and NCK interacting kinase, transcript variant 1 (from RefSeq NM_015028.4)
Gencode Transcript: ENST00000436636.7_12
Gencode Gene: ENSG00000154310.17_16
Transcript (Including UTRs)
   Position: hg19 chr3:170,776,203-171,178,194 Size: 401,992 Total Exon Count: 33 Strand: -
Coding Region
   Position: hg19 chr3:170,781,670-171,177,852 Size: 396,183 Coding Exon Count: 33 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:170,776,203-171,178,194)mRNA (may differ from genome)Protein (1360 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TNIK_HUMAN
DESCRIPTION: RecName: Full=TRAF2 and NCK-interacting protein kinase; EC=2.7.11.1;
FUNCTION: Serine/threonine kinase that acts as an essential activator of the Wnt signaling pathway. Recruited to promoters of Wnt target genes and required to activate their expression. May act by phosphorylating TCF4/TCF7L2. Appears to act upstream of the JUN N-terminal pathway. May play a role in the response to environmental stress. Part of a signaling complex composed of NEDD4, RAP2A and TNIK which regulates neuronal dendrite extension and arborization during development. More generally, it may play a role in cytoskeletal rearrangements and regulate cell spreading. Phosphorylates SMAD1 on Thr-322.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SUBUNIT: Interacts (via the CNH domain) with RAP2A (GTP-bound form preferentially); the interaction is direct and required for the activation of TNIK by RAP2A. Interacts with NEDD4; recruits RAP2A to NEDD4. Interacts with TRAF2 and NCK. Interacts with TCF7L2/TCF4 and CTNNB1; the interaction is direct. Interacts with TANC1.
INTERACTION: Q6F6B3:Tanc1 (xeno); NbExp=2; IntAct=EBI-1051794, EBI-2133582;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Recycling endosome. Cytoplasm, cytoskeleton. Note=Associated with recycling endosomes and the cytoskeletal fraction upon RAP2A overexpression.
TISSUE SPECIFICITY: Expressed ubiquitously. Highest levels observed in heart, brain and skeletal muscle. Expressed in normal colonic epithelia and colorectal cancer tissues.
PTM: Autophosphorylated. Autophosphorylation is activated by RAP2A and induces association to the cytoskeletal fraction.
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.
SIMILARITY: Contains 1 CNH domain.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=BAA25477.2; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TNIK
Diseases sorted by gene-association score: mental retardation, autosomal recessive 54* (919), autosomal recessive non-syndromic intellectual disability* (61), intellectual disability (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.06 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 222.29 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -140.20342-0.410 Picture PostScript Text
3' UTR -1319.345467-0.241 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001180 - Citron
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00780 - CNH domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2X7F - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9UKE5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008349 MAP kinase kinase kinase kinase activity
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0000185 activation of MAPKKK activity
GO:0001934 positive regulation of protein phosphorylation
GO:0006468 protein phosphorylation
GO:0007010 cytoskeleton organization
GO:0007256 activation of JNKK activity
GO:0007346 regulation of mitotic cell cycle
GO:0007399 nervous system development
GO:0016055 Wnt signaling pathway
GO:0016310 phosphorylation
GO:0030033 microvillus assembly
GO:0031532 actin cytoskeleton reorganization
GO:0035556 intracellular signal transduction
GO:0042981 regulation of apoptotic process
GO:0046777 protein autophosphorylation
GO:0048814 regulation of dendrite morphogenesis
GO:0072659 protein localization to plasma membrane

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0016324 apical plasma membrane
GO:0055037 recycling endosome
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AB011123 - Homo sapiens KIAA0551 mRNA for KIAA0551 protein.
BC150256 - Homo sapiens TRAF2 and NCK interacting kinase, mRNA (cDNA clone MGC:166814 IMAGE:9007184), complete cds.
AK291056 - Homo sapiens cDNA FLJ77112 complete cds, highly similar to Homo sapiens Traf2 and NCK interacting kinase, splice variant 5 (TNIK) mRNA.
AF172264 - Homo sapiens Traf2 and NCK interacting kinase, splice variant 1 (TNIK) mRNA, complete cds.
AF172265 - Homo sapiens Traf2 and NCK interacting kinase, splice variant 2 (TNIK) mRNA, complete cds.
AF172266 - Homo sapiens Traf2 and NCK interacting kinase, splice variant 3 (TNIK) mRNA, complete cds.
AF172267 - Homo sapiens Traf2 and NCK interacting kinase, splice variant 4 (TNIK) mRNA, complete cds.
AF172268 - Homo sapiens Traf2 and NCK interacting kinase, splice variant 5 (TNIK) mRNA, complete cds.
AF172269 - Homo sapiens Traf2 and NCK interacting kinase, splice variant 6 (TNIK) mRNA, complete cds.
AF172270 - Homo sapiens Traf2 and NCK interacting kinase, splice variant 7 (TNIK) mRNA, complete cds.
AF172271 - Homo sapiens Traf2 and NCK interacting kinase, splice variant 8 (TNIK) mRNA, complete cds.
AB384494 - Synthetic construct DNA, clone: pF1KA0551, Homo sapiens TNIK gene for TRAF2 and NCK-interacting protein kinase, complete cds, without stop codon, in Flexi system.
BC019081 - Homo sapiens TRAF2 and NCK interacting kinase, mRNA (cDNA clone IMAGE:4651684), partial cds.
BC055427 - Homo sapiens TRAF2 and NCK interacting kinase, mRNA (cDNA clone IMAGE:4838784), complete cds.
AK026470 - Homo sapiens cDNA: FLJ22817 fis, clone KAIA3476, highly similar to AF172271 Homo sapiens Traf2 and NCK interacting kinase splice variant 8 (TNIK) mRNA.
JD563222 - Sequence 544246 from Patent EP1572962.
JD045268 - Sequence 26292 from Patent EP1572962.
JD075125 - Sequence 56149 from Patent EP1572962.
JD399715 - Sequence 380739 from Patent EP1572962.
JD544919 - Sequence 525943 from Patent EP1572962.
JD283136 - Sequence 264160 from Patent EP1572962.
JD427826 - Sequence 408850 from Patent EP1572962.
JD393773 - Sequence 374797 from Patent EP1572962.
JD082473 - Sequence 63497 from Patent EP1572962.
JD082852 - Sequence 63876 from Patent EP1572962.
JD288051 - Sequence 269075 from Patent EP1572962.
JD330461 - Sequence 311485 from Patent EP1572962.
JD266242 - Sequence 247266 from Patent EP1572962.
JD165774 - Sequence 146798 from Patent EP1572962.
JD355928 - Sequence 336952 from Patent EP1572962.
JD182792 - Sequence 163816 from Patent EP1572962.
JD057199 - Sequence 38223 from Patent EP1572962.
JD457866 - Sequence 438890 from Patent EP1572962.
JD299202 - Sequence 280226 from Patent EP1572962.
JD062004 - Sequence 43028 from Patent EP1572962.
JD503237 - Sequence 484261 from Patent EP1572962.
JD172540 - Sequence 153564 from Patent EP1572962.
JD085946 - Sequence 66970 from Patent EP1572962.
JD558171 - Sequence 539195 from Patent EP1572962.
JD501203 - Sequence 482227 from Patent EP1572962.
JD489771 - Sequence 470795 from Patent EP1572962.
JD279655 - Sequence 260679 from Patent EP1572962.
JD279654 - Sequence 260678 from Patent EP1572962.
JD550191 - Sequence 531215 from Patent EP1572962.
JD386338 - Sequence 367362 from Patent EP1572962.
JD510446 - Sequence 491470 from Patent EP1572962.
JD082616 - Sequence 63640 from Patent EP1572962.
AB017115 - Homo sapiens mRNA for AD 2, partial cds.
BC018093 - Homo sapiens cDNA clone IMAGE:4793550.
JD289338 - Sequence 270362 from Patent EP1572962.
JD188993 - Sequence 170017 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UKE5 (Reactome details) participates in the following event(s):

R-HSA-2559580 Oxidative Stress Induced Senescence
R-HSA-2559583 Cellular Senescence
R-HSA-2262752 Cellular responses to stress
R-HSA-8953897 Cellular responses to external stimuli

-  Other Names for This Gene
  Alternate Gene Symbols: A7E2A3, A8K4U1, D3DNQ6, ENST00000436636.1, ENST00000436636.2, ENST00000436636.3, ENST00000436636.4, ENST00000436636.5, ENST00000436636.6, KIAA0551, NM_015028, O60298, Q8WUY7, Q9UKD8, Q9UKD9, Q9UKE0, Q9UKE1, Q9UKE2, Q9UKE3, Q9UKE4, Q9UKE5, TNIK_HUMAN, uc320ezp.1, uc320ezp.2
UCSC ID: ENST00000436636.7_12
RefSeq Accession: NM_015028.4
Protein: Q9UKE5 (aka TNIK_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.