Human Gene TEX15 (ENST00000643185.2_13) from GENCODE V47lift37
  Description: testis expressed 15, meiosis and synapsis associated, transcript variant 1 (from RefSeq NM_001350162.2)
Gencode Transcript: ENST00000643185.2_13
Gencode Gene: ENSG00000133863.9_16
Transcript (Including UTRs)
   Position: hg19 chr8:30,689,060-30,770,524 Size: 81,465 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr8:30,690,802-30,744,818 Size: 54,017 Coding Exon Count: 9 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:30,689,060-30,770,524)mRNA (may differ from genome)Protein (3172 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TEX15
Diseases sorted by gene-association score: azoospermia (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -73.00215-0.340 Picture PostScript Text
3' UTR -364.501742-0.209 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  AL133653 - Homo sapiens mRNA; cDNA DKFZp434M2415 (from clone DKFZp434M2415).
JD244309 - Sequence 225333 from Patent EP1572962.
JD166247 - Sequence 147271 from Patent EP1572962.
JD341093 - Sequence 322117 from Patent EP1572962.
JD083070 - Sequence 64094 from Patent EP1572962.
JD336146 - Sequence 317170 from Patent EP1572962.
JD080580 - Sequence 61604 from Patent EP1572962.
JD323521 - Sequence 304545 from Patent EP1572962.
JD248783 - Sequence 229807 from Patent EP1572962.
JD492863 - Sequence 473887 from Patent EP1572962.
JD285082 - Sequence 266106 from Patent EP1572962.
BC140934 - Homo sapiens testis expressed 15, mRNA (cDNA clone MGC:176611 IMAGE:9056746), complete cds.
JD267268 - Sequence 248292 from Patent EP1572962.
AF285605 - Homo sapiens testis protein TEX15 (TEX15) mRNA, complete cds.
BC141841 - Homo sapiens testis expressed 15, mRNA (cDNA clone IMAGE:8860305), partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A2R8Y358, A0A2R8Y358_HUMAN, ENST00000643185.1, NM_001350162, TEX15 , uc328jkp.1, uc328jkp.2
UCSC ID: ENST00000643185.2_13
RefSeq Accession: NM_001350162.2

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.