Human Gene TERT (ENST00000310581.10_12) from GENCODE V47lift37
  Description: telomerase reverse transcriptase, transcript variant 1 (from RefSeq NM_198253.3)
Gencode Transcript: ENST00000310581.10_12
Gencode Gene: ENSG00000164362.21_16
Transcript (Including UTRs)
   Position: hg19 chr5:1,253,282-1,295,183 Size: 41,902 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chr5:1,253,843-1,295,104 Size: 41,262 Coding Exon Count: 16 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:1,253,282-1,295,183)mRNA (may differ from genome)Protein (1132 aa)
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-  Comments and Description Text from UniProtKB
  ID: TERT_HUMAN
DESCRIPTION: RecName: Full=Telomerase reverse transcriptase; EC=2.7.7.49; AltName: Full=HEST2; AltName: Full=Telomerase catalytic subunit; AltName: Full=Telomerase-associated protein 2; Short=TP2;
FUNCTION: Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. Active in progenitor and cancer cells. Inactive, or very low activity, in normal somatic cells. Catalytic component of the teleromerase holoenzyme complex whose main activity is the elongation of telomeres by acting as a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. Catalyzes the RNA- dependent extension of 3'-chromosomal termini with the 6- nucleotide telomeric repeat unit, 5'-TTAGGG-3'. The catalytic cycle involves primer binding, primer extension and release of product once the template boundary has been reached or nascent product translocation followed by further extension. More active on substrates containing 2 or 3 telomeric repeats. Telomerase activity is regulated by a number of factors including telomerase complex-associated proteins, chaperones and polypeptide modifiers. Modulates Wnt signaling. Plays important roles in aging and antiapoptosis.
CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).
SUBUNIT: Homodimer; dimerization is required to produce a functional complex. Oligomer; can form oligomers in the absence of the telomerase RNA template component (TERC). Catalytic subunit of the telomerase holoenzyme complex composed minimally of TERT and TERC. The telomerase complex is composed of TERT, DKC1, WDR79/TCAB1, NOP10, NHP2, GAR1, TEP1, EST1A, POT1 and a telomerase RNA template component (TERC). The molecular chaperone HSP90/P23 complex is required for correct assembly and stabilization of the active telomerase. Interacts directly with HSP90A and PTGES3. Interacts with HSPA1A; the interaction occurs in the absence of TERC and dissociates once the complex has formed. Interacts with RAN; the interaction promotes nuclear export of TERT. Interacts with XPO1. Interacts with PTPN11; the interaction retains TERT in the nucleus. Interacts with NCL (via RRM1 and C-terminal RRM4/Arg/Gly-rich domains); the interaction is important for nucleolar localization of TERT. Interacts with SMARCA4 (via the bromodomain); the interaction regulates Wnt-mediated signaling. Interacts with MCRS1 (isoform MCRS2); the interaction inhibits in vitro telomerase activity. Interacts with PIF1; the interaction has no effect on the elongation activity of TERT. Interacts with PML; the interaction recruits TERT to PML bodies and inhibits telomerase activity. Interacts with GNL3L (By similarity).
INTERACTION: Q9Y265:RUVBL1; NbExp=11; IntAct=EBI-1772203, EBI-353675;
SUBCELLULAR LOCATION: Nucleus, nucleolus. Nucleus, nucleoplasm. Nucleus. Chromosome, telomere. Cytoplasm. Nucleus, PML body. Note=Shuttling between nuclear and cytoplasm depends on cell cycle, phosphorylation states, transformation and DNA damage. Diffuse localization in the nucleoplasm. Enriched in nucleoli of certain cell types. Translocated to the cytoplasm via nuclear pores in a CRM1/RAN-dependent manner involving oxidative stress- mediated phosphorylation at Tyr-707. Dephosphorylation at this site by SHP2 retains TERT in the nucleus. Translocated to the nucleus by phosphorylation by AKT.
TISSUE SPECIFICITY: Expressed at a high level in thymocyte subpopulations, at an intermediate level in tonsil T-lymphocytes, and at a low to undetectable level in peripheral blood T- lymphocytes.
INDUCTION: Activated by cytotoxic events and down-regulated during aging. In peripheral T-lymphocytes, induced By CD3 and by PMA/ionomycin. Inhibited by herbimycin B.
DOMAIN: The primer grip sequence in the RT domain is required for telomerase activity and for stable association with short telomeric primers.
DOMAIN: The RNA-interacting domain 1 (RD1)/N-terminal extension (NTE) is required for interaction with the pseudoknot-template domain of each of TERC dimers. It contains anchor sites that bind primer nucleotides upstream of the RNA-DNA hybrid and is thus an essential determinant of repeat addition processivity.
DOMAIN: The RNA-interacting domain 2 (RD2) is essential for both interaction with the CR4-CR5 domain of TERC and for DNA sythesis.
PTM: Ubiquitinated, leading to proteasomal degradation.
PTM: Phosphorylation at Tyr-707 under oxidative stress leads to translocation of TERT to the cytoplasm and reduces its antiapoptotic activity. Dephosphorylated by SHP2/PTPN11 leading to nuclear retention. Phosphorylation by the AKT pathway promotes nuclear location.
DISEASE: Note=Activation of telomerase has been implicated in cell immortalization and cancer cell pathogenesis.
DISEASE: Defects in TERT are associated with susceptibilty to aplastic anemia (AA) [MIM:609135]. AA is a rare disease in which the reduction of the circulating blood cells results from damage to the stem cell pool in bone marrow. In most patients, the stem cell lesion is caused by an autoimmune attack. T-lymphocytes, activated by an endogenous or exogenous, and most often unknown antigenic stimulus, secrete cytokines, including IFN-gamma, which would in turn be able to suppress hematopoiesis.
DISEASE: Note=Genetic variations in TERT are associated with coronary artery disease (CAD).
DISEASE: Defects in TERT are the cause of dyskeratosis congenita autosomal dominant type 2 (DKCA2) [MIM:613989]. A rare multisystem disorder caused by defective telomere maintenance. It is characterized by progressive bone marrow failure, and the clinical triad of reticulated skin hyperpigmentation, nail dystrophy, and mucosal leukoplakia. Common but variable features include premature graying, aplastic anemia, low platelets, osteoporosis, pulmonary fibrosis, and liver fibrosis among others. Early mortality is often associated with bone marrow failure, infections, fatal pulmonary complications, or malignancy.
DISEASE: Defects in TERT are the cause of pulmonary fibrosis, and/or bone marrow failure, telomere-related, type 1 (PFBMFT1) [MIM:614742]. A disease associated with shortened telomeres. Pulmonary fibrosis is the most common manifestation. Other manifestations include aplastic anemia due to bone marrow failure, hepatic fibrosis, and increased cancer risk, particularly myelodysplastic syndrome and acute myeloid leukemia. Phenotype, age at onset, and severity are determined by telomere length. infections, fatal pulmonary complications, or malignancy.
DISEASE: Defects in TERT are the cause of dyskeratosis congenita autosomal recessive type 4 (DKCB4) [MIM:613989]. A rare multisystem disorder caused by defective telomere maintenance. It is characterized by progressive bone marrow failure, and the clinical triad of reticulated skin hyperpigmentation, nail dystrophy, and mucosal leukoplakia. Common but variable features include premature graying, aplastic anemia, low platelets, osteoporosis, pulmonary fibrosis, and liver fibrosis among others. Early mortality is often associated with bone marrow failure, infections, fatal pulmonary complications, or malignancy.
DISEASE: Defects in TERT are a cause of susceptibility to pulmonary fibrosis idiopathic (IPF) [MIM:178500]. Pulmonary fibrosis is a lung disease characterized by shortness of breath, radiographically evident diffuse pulmonary infiltrates, and varying degrees of inflammation and fibrosis on biopsy. It results in acute lung injury with subsequent scarring and endstage lung disease.
SIMILARITY: Belongs to the reverse transcriptase family. Telomerase subfamily.
SIMILARITY: Contains 1 reverse transcriptase domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/tert/";

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TERT
Diseases sorted by gene-association score: dyskeratosis congenita, autosomal dominant 2* (1305), pulmonary fibrosis and/or bone marrow failure, telomere-related, 1* (1282), melanoma, cutaneous malignant, 9* (594), aplastic anemia* (463), dyskeratosis congenita autosomal dominant* (439), dyskeratosis congenita, autosomal recessive 1* (283), kidney clear cell sarcoma* (247), pulmonary fibrosis, idiopathic* (240), dyskeratosis congenita, autosomal dominant 1* (231), leukemia, acute myeloid* (215), dyskeratosis congenita* (136), hepatocellular carcinoma* (136), pulmonary fibrosis, familial* (100), tert-related cutaneous malignant melanoma* (100), tert-related dyskeratosis congenita* (100), tert-related familial pulmonary fibrosis* (100), pulmonary fibrosis (30), dyskeratosis congenita autosomal recessive (21), acral lentiginous melanoma (17), pancytopenia (15), cri-du-chat syndrome (13), malignant melanoma, somatic* (11), bladder disease (9), benign meningioma (9), cervical intraepithelial neoplasia (9), lung disease (8), mucosal melanoma (8), bowenoid papulosis (8), ureter cancer (8), ameloblastoma (8), larynx cancer (7), cervical cancer, somatic (7), inherited bone marrow failure syndromes (7), malignant glioma (7), vulvar intraepithelial neoplasia (7), acute myeloid leukemia, flt3-related (7), urinary bladder cancer (7), panophthalmitis (6), tongue cancer (6), spermatocele (6), thyroid cancer (6), intraventricular meningioma (6), lung cancer (6), bladder papillary transitional cell neoplasm (6), urinary tract papillary transitional cell benign neoplasm (6), soft tissue sarcoma (5), bladder cancer, somatic (5), female stress incontinence (5), juxtacortical chondroma (5), artery disease (4), spinal chordoma (4), mixed ductal-endocrine carcinoma (4), chorioretinal scar (4), cystitis cystica (4), purulent endophthalmitis (4), myelodysplastic syndrome (4), colorectal cancer (3), meninges hemangiopericytoma (3), nasopharyngeal carcinoma (3), stomach cancer (3), pancreatic cancer (2), melanoma (2), ovarian cancer, somatic (2), esophageal cancer (2), prostate cancer (2), lung cancer susceptibility 3 (2), adamantinoma of long bones (1), meningioma, familial (1), prostate cancer susceptibility (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.26 RPKM in Testis
Total median expression: 3.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -28.0079-0.354 Picture PostScript Text
3' UTR -229.10561-0.408 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000477 - RVT
IPR021891 - Telomerase_RBD
IPR003545 - Telomerase_RT

Pfam Domains:
PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase)
PF12009 - Telomerase ribonucleoprotein complex - RNA binding domain

SCOP Domains:
56672 - DNA/RNA polymerases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2BCK - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O14746
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details   Gene Details
Gene SorterGene Sorter   Gene Sorter
 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000049 tRNA binding
GO:0001223 transcription coactivator binding
GO:0003677 DNA binding
GO:0003720 telomerase activity
GO:0003721 telomerase RNA reverse transcriptase activity
GO:0003723 RNA binding
GO:0003964 RNA-directed DNA polymerase activity
GO:0003968 RNA-directed 5'-3' RNA polymerase activity
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0016740 transferase activity
GO:0016779 nucleotidyltransferase activity
GO:0042162 telomeric DNA binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0047485 protein N-terminus binding
GO:0051087 chaperone binding
GO:0070034 telomerase RNA binding

Biological Process:
GO:0000723 telomere maintenance
GO:0001172 transcription, RNA-templated
GO:0006278 RNA-dependent DNA biosynthetic process
GO:0007004 telomere maintenance via telomerase
GO:0007005 mitochondrion organization
GO:0010629 negative regulation of gene expression
GO:0022616 DNA strand elongation
GO:0030177 positive regulation of Wnt signaling pathway
GO:0030422 production of siRNA involved in RNA interference
GO:0031647 regulation of protein stability
GO:0032092 positive regulation of protein binding
GO:0032774 RNA biosynthetic process
GO:0042635 positive regulation of hair cycle
GO:0043066 negative regulation of apoptotic process
GO:0043524 negative regulation of neuron apoptotic process
GO:0045766 positive regulation of angiogenesis
GO:0046326 positive regulation of glucose import
GO:0046686 response to cadmium ion
GO:0051000 positive regulation of nitric-oxide synthase activity
GO:0060253 negative regulation of glial cell proliferation
GO:0070200 establishment of protein localization to telomere
GO:0071456 cellular response to hypoxia
GO:0071897 DNA biosynthetic process
GO:0090399 replicative senescence
GO:1900087 positive regulation of G1/S transition of mitotic cell cycle
GO:1902895 positive regulation of pri-miRNA transcription from RNA polymerase II promoter
GO:1903620 positive regulation of transdifferentiation
GO:1903704 negative regulation of production of siRNA involved in RNA interference
GO:1904707 positive regulation of vascular smooth muscle cell proliferation
GO:1904751 positive regulation of protein localization to nucleolus
GO:1904754 positive regulation of vascular associated smooth muscle cell migration
GO:1904837 beta-catenin-TCF complex assembly
GO:2000352 negative regulation of endothelial cell apoptotic process
GO:2000648 positive regulation of stem cell proliferation
GO:2000773 negative regulation of cellular senescence
GO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Cellular Component:
GO:0000333 telomerase catalytic core complex
GO:0000781 chromosome, telomeric region
GO:0000783 nuclear telomere cap complex
GO:0000784 nuclear chromosome, telomeric region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005697 telomerase holoenzyme complex
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016605 PML body
GO:0016607 nuclear speck
GO:0031379 RNA-directed RNA polymerase complex
GO:0042645 mitochondrial nucleoid
GO:1990572 TERT-RMRP complex


-  Descriptions from all associated GenBank mRNAs
  AX810038 - Sequence 3 from Patent EP1333094.
AX810378 - Sequence 343 from Patent EP1333094.
BC062321 - Homo sapiens telomerase reverse transcriptase, mRNA (cDNA clone IMAGE:5095305).
AF015950 - Homo sapiens telomerase reverse transcriptase (hTRT) mRNA, complete cds.
AX810036 - Sequence 1 from Patent EP1333094.
DM139039 - Methods of enriching fetal cells.
AF018167 - Homo sapiens telomerase catalytic subunit (hEST2) mRNA, complete cds.
LF384934 - JP 2014500723-A/192437: Polycomb-Associated Non-Coding RNAs.
JD158390 - Sequence 139414 from Patent EP1572962.
JD460795 - Sequence 441819 from Patent EP1572962.
JD470918 - Sequence 451942 from Patent EP1572962.
JD440572 - Sequence 421596 from Patent EP1572962.
JD440571 - Sequence 421595 from Patent EP1572962.
JD374234 - Sequence 355258 from Patent EP1572962.
JD366868 - Sequence 347892 from Patent EP1572962.
JD389101 - Sequence 370125 from Patent EP1572962.
JD450836 - Sequence 431860 from Patent EP1572962.
JD421653 - Sequence 402677 from Patent EP1572962.
JD139876 - Sequence 120900 from Patent EP1572962.
JD058166 - Sequence 39190 from Patent EP1572962.
JD459106 - Sequence 440130 from Patent EP1572962.
JD334816 - Sequence 315840 from Patent EP1572962.
JD103528 - Sequence 84552 from Patent EP1572962.
BC156388 - Synthetic construct Homo sapiens clone IMAGE:100061944, MGC:190131 telomerase reverse transcriptase (TERT) mRNA, encodes complete protein.
BC172541 - Synthetic construct Homo sapiens clone IMAGE:100069235, MGC:199246 telomerase reverse transcriptase (TERT) mRNA, encodes complete protein.
AB085628 - Homo sapiens mRNA for telomerase reverse transcriptase, complete cds.
AB086379 - Homo sapiens hTERT mRNA for beta and gamma deletion isoform of telomerase reverse transcriptase, complete cds.
AB086950 - Homo sapiens TERT mRNA for ABG-deleted variant of telomerase reverse transcriptase, complete cds.
LF331999 - JP 2014500723-A/139502: Polycomb-Associated Non-Coding RNAs.
JF896284 - Homo sapiens telomerase reverse transcriptase isoform Delta2-13 (TERT) mRNA, partial sequence, alternatively spliced.
JF896281 - Homo sapiens telomerase reverse transcriptase isoform Delta3p-12 (TERT) mRNA, partial sequence, alternatively spliced.
JF896285 - Homo sapiens telomerase reverse transcriptase isoform Delta4-13 (TERT) mRNA, partial cds, alternatively spliced.
JF896283 - Homo sapiens telomerase reverse transcriptase isoform Delta2-8 (TERT) mRNA, partial sequence, alternatively spliced.
JF896280 - Homo sapiens telomerase reverse transcriptase isoform Delta2 (TERT) mRNA, partial sequence, alternatively spliced.
AX810043 - Sequence 8 from Patent EP1333094.
JF896282 - Homo sapiens telomerase reverse transcriptase isoform Delta4C (TERT) mRNA, partial cds, alternatively spliced.
JF896286 - Homo sapiens telomerase reverse transcriptase isoform INTR1 (TERT) mRNA, partial sequence, alternatively spliced.
MA620511 - JP 2018138019-A/192437: Polycomb-Associated Non-Coding RNAs.
MA567576 - JP 2018138019-A/139502: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_achPathway - Role of nicotinic acetylcholine receptors in the regulation of apoptosis
h_telPathway - Telomeres, Telomerase, Cellular Aging, and Immortality

Reactome (by CSHL, EBI, and GO)

Protein O14746 (Reactome details) participates in the following event(s):

R-HSA-164616 Biogenesis And Assembly Of The Telomerase RNP
R-HSA-3322422 Beta-catenin recruits SMARCA4
R-HSA-163096 Recruitment of Telomerase RNP to the Telomeric Chromosome End
R-HSA-163120 Disassociation of Telomerase RNP and the Chromosome End
R-HSA-163099 Alignment Of The RNA Template On The Telomeric Chromosome End
R-HSA-164617 Elongation of Extended Telomeric Chromosome End
R-HSA-164620 Translocation Of Telomerase RNP And Alignment Of RNA Template (TERC) To Extended Single Stranded Telomeric Chromosome-End
R-HSA-163090 Elongation Of The Telomeric Chromosome End
R-HSA-171319 Telomere Extension By Telomerase
R-HSA-201722 Formation of the beta-catenin:TCF transactivating complex
R-HSA-180786 Extension of Telomeres
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-157579 Telomere Maintenance
R-HSA-195721 Signaling by WNT
R-HSA-73886 Chromosome Maintenance
R-HSA-162582 Signal Transduction
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000310581.1, ENST00000310581.2, ENST00000310581.3, ENST00000310581.4, ENST00000310581.5, ENST00000310581.6, ENST00000310581.7, ENST00000310581.8, ENST00000310581.9, EST2, NM_198253, O14746, O14783, Q2XS35, Q8N6C3, Q8NG38, Q8NG46, TCS1, TERT_HUMAN, TRT, uc317oue.1, uc317oue.2
UCSC ID: ENST00000310581.10_12
RefSeq Accession: NM_198253.3
Protein: O14746 (aka TERT_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene TERT:
dkc (Dyskeratosis Congenita and Related Telomere Biology Disorders)
pf (Pulmonary Fibrosis Predisposition Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.