Human Gene TCL6 (ENST00000716989.1_1) from GENCODE V47lift37
  Description: T cell leukemia/lymphoma 6 (non-protein coding) (from HGNC TCL6)
Gencode Transcript: ENST00000716989.1_1
Gencode Gene: ENSG00000187621.17_9
Transcript (Including UTRs)
   Position: hg19 chr14:96,087,264-96,130,229 Size: 42,966 Total Exon Count: 8 Strand: +


Page IndexSequence and LinksPrimersMalaCardsCTDMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:96,087,264-96,130,229)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerHGNCMalacardsPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TCL6
Diseases sorted by gene-association score: t-cell leukemia (21)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BX161462 - human full-length cDNA clone CS0DI060YI15 of Placenta of Homo sapiens (human).
AB035338 - Homo sapiens TCL6e1 mRNA for T-cell leukemia/lymphoma 6 ORF163, complete cds, clone:pPLE1.
AB035337 - Homo sapiens TCL6d1 mRNA for T-cell leukemia/lymphoma 6 ORF119, complete cds, clone:pPLD1.
JD238623 - Sequence 219647 from Patent EP1572962.
JD080698 - Sequence 61722 from Patent EP1572962.
JD065429 - Sequence 46453 from Patent EP1572962.
JD509418 - Sequence 490442 from Patent EP1572962.
JD323294 - Sequence 304318 from Patent EP1572962.
JD204479 - Sequence 185503 from Patent EP1572962.
JD038159 - Sequence 19183 from Patent EP1572962.
JD519552 - Sequence 500576 from Patent EP1572962.
JD392305 - Sequence 373329 from Patent EP1572962.
JD153456 - Sequence 134480 from Patent EP1572962.
JD162355 - Sequence 143379 from Patent EP1572962.
JD282046 - Sequence 263070 from Patent EP1572962.
JD282047 - Sequence 263071 from Patent EP1572962.
JD282048 - Sequence 263072 from Patent EP1572962.
JD269924 - Sequence 250948 from Patent EP1572962.
JD234023 - Sequence 215047 from Patent EP1572962.
JD247139 - Sequence 228163 from Patent EP1572962.
JD060968 - Sequence 41992 from Patent EP1572962.
JD160540 - Sequence 141564 from Patent EP1572962.
JD255717 - Sequence 236741 from Patent EP1572962.
JD425854 - Sequence 406878 from Patent EP1572962.
JD212174 - Sequence 193198 from Patent EP1572962.
JD528527 - Sequence 509551 from Patent EP1572962.
JD380228 - Sequence 361252 from Patent EP1572962.
JD265529 - Sequence 246553 from Patent EP1572962.
JD507104 - Sequence 488128 from Patent EP1572962.
AB035332 - Homo sapiens TCL6a1 mRNA for T-cell leukemia/lymphoma 6 ORF141, complete cds.
AB035335 - Homo sapiens TCL6c1 mRNA for T-cell leukemia/lymphoma 6 ORF105, complete cds, clone:pPLC1.
AB035333 - Homo sapiens TCL6a2 mRNA for T-cell leukemia/lymphoma 6 ORF141, complete cds, clone:pPLA2.
AB035334 - Homo sapiens TCL6a3 mRNA for T-cell leukemia/lymphoma 6 ORF141, complete cds, clone:pPLA3.
AB035340 - Homo sapiens TCL6f1 mRNA for T-cell leukemia/lymphoma 6 ORF141, T-cell leukemia/lymphoma 6 ORF72, complete cds, clone:pDG1.
AB035341 - Homo sapiens TCL6f2 mRNA for T-cell leukemia/lymphoma 6 ORF141, T-cell leukemia/lymphoma 6 ORF72, complete cds, clone:pDG2.
AB035342 - Homo sapiens TCL6f3 mRNA for T-cell leukemia/lymphoma 6 ORF105, T-cell leukemia/lymphoma 6 ORF72, complete cds, clone:pDG3.
AB035343 - Homo sapiens TCL6f4 mRNA for T-cell leukemia/lymphoma 6 ORF105, T-cell leukemia/lymphoma 6 ORF72, complete cds, clone:pDG4.
JD309103 - Sequence 290127 from Patent EP1572962.
JD479346 - Sequence 460370 from Patent EP1572962.
JD324113 - Sequence 305137 from Patent EP1572962.
JD387004 - Sequence 368028 from Patent EP1572962.
AB527995 - Synthetic construct DNA, clone: pF1KB6823, Homo sapiens TCL6 gene for T-cell leukemia/lymphoma protein 6, without stop codon, in Flexi system.
JD275802 - Sequence 256826 from Patent EP1572962.
JD050505 - Sequence 31529 from Patent EP1572962.
JD127766 - Sequence 108790 from Patent EP1572962.
JD068408 - Sequence 49432 from Patent EP1572962.
JD104386 - Sequence 85410 from Patent EP1572962.
JD297276 - Sequence 278300 from Patent EP1572962.
JD167973 - Sequence 148997 from Patent EP1572962.
JD317338 - Sequence 298362 from Patent EP1572962.
JD231806 - Sequence 212830 from Patent EP1572962.
JD281746 - Sequence 262770 from Patent EP1572962.
JD238699 - Sequence 219723 from Patent EP1572962.
JD562235 - Sequence 543259 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BX161462, uc346ukw.1
UCSC ID: ENST00000716989.1_1
RefSeq Accession: NR_152604.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.