Human Gene TBRG1 (ENST00000441174.8_4) from GENCODE V47lift37
  Description: transforming growth factor beta regulator 1, transcript variant 1 (from RefSeq NM_032811.3)
Gencode Transcript: ENST00000441174.8_4
Gencode Gene: ENSG00000154144.13_8
Transcript (Including UTRs)
   Position: hg19 chr11:124,492,760-124,505,822 Size: 13,063 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr11:124,492,980-124,502,134 Size: 9,155 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:124,492,760-124,505,822)mRNA (may differ from genome)Protein (411 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TBRG1_HUMAN
DESCRIPTION: RecName: Full=Transforming growth factor beta regulator 1; AltName: Full=Nuclear interactor of ARF and Mdm2;
FUNCTION: Acts as a growth inhibitor. Can activate p53/TP53, causes G1 arrest and collaborates with CDKN2A to restrict proliferation, but does not require either protein to inhibit DNA synthesis. Redistributes CDKN2A into the nucleoplasm. Involved in maintaining chromosomal stability.
SUBUNIT: Interacts with CDKN2A and MDM2.
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Widely expressed at low levels in most tissues, with highest levels in pancreas, lung and liver. Expression is decreased in primary tumors including lung, liver, breast, pancreas and kidney carcinomas, chronic lymphocytic leukemia and diffuse large B-cell lymphoma.
PTM: Ubiquitinated; mediated by MDM2 and leading to its subsequent proteasomal degradation.
SIMILARITY: Belongs to the TBRG1 family.
SIMILARITY: Contains 1 FYR C-terminal domain.
SIMILARITY: Contains 1 FYR N-terminal domain.
SEQUENCE CAUTION: Sequence=BAB84966.1; Type=Frameshift; Positions=229;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 25.18 RPKM in Spleen
Total median expression: 785.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -92.80220-0.422 Picture PostScript Text
3' UTR -969.603688-0.263 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003889 - FYrich_C
IPR003888 - FYrich_N

Pfam Domains:
PF05964 - F/Y-rich N-terminus
PF05965 - F/Y rich C-terminus

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2WZO - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q3YBR2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006260 DNA replication
GO:0007049 cell cycle
GO:0007050 cell cycle arrest
GO:0008285 negative regulation of cell proliferation
GO:0050821 protein stabilization
GO:1990173 protein localization to nucleoplasm

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  BC107428 - Homo sapiens transforming growth factor beta regulator 1, mRNA (cDNA clone IMAGE:4805690).
AK074594 - Homo sapiens cDNA FLJ90113 fis, clone HEMBA1006724.
BC041043 - Homo sapiens transforming growth factor beta regulator 1, mRNA (cDNA clone IMAGE:4901045), complete cds.
AK222936 - Homo sapiens mRNA for transforming growth factor beta regulator 1 variant, clone: HRC09392.
AK057749 - Homo sapiens cDNA FLJ25020 fis, clone CBL01662.
AK027527 - Homo sapiens cDNA FLJ14621 fis, clone NT2RP2000079.
BC018452 - Homo sapiens transforming growth factor beta regulator 1, mRNA (cDNA clone IMAGE:4500659), partial cds.
BC064392 - Homo sapiens transforming growth factor beta regulator 1, mRNA (cDNA clone IMAGE:5745733).
BC032312 - Homo sapiens transforming growth factor beta regulator 1, mRNA (cDNA clone IMAGE:5212572), complete cds.
BC073160 - Homo sapiens transforming growth factor beta regulator 1, mRNA (cDNA clone IMAGE:6050533), partial cds.
JD192852 - Sequence 173876 from Patent EP1572962.
BC109269 - Homo sapiens transforming growth factor beta regulator 1, mRNA (cDNA clone IMAGE:40026548), complete cds.
KJ906378 - Synthetic construct Homo sapiens clone ccsbBroadEn_16048 TBRG1 gene, encodes complete protein.
DQ144542 - Homo sapiens NIAM mRNA, complete cds.
JD140781 - Sequence 121805 from Patent EP1572962.
JD207004 - Sequence 188028 from Patent EP1572962.
KJ900880 - Synthetic construct Homo sapiens clone ccsbBroadEn_10274 TBRG1 gene, encodes complete protein.
AK074140 - Homo sapiens mRNA for FLJ00213 protein.
JD506073 - Sequence 487097 from Patent EP1572962.
AY696294 - Homo sapiens transforming growth factor beta regulator 1 (TBRG1) mRNA, complete cds, alternatively spliced.
AL713631 - Homo sapiens mRNA; cDNA DKFZp761B1421 (from clone DKFZp761B1421).
KJ903481 - Synthetic construct Homo sapiens clone ccsbBroadEn_12875 TBRG1 gene, encodes complete protein.
AL831881 - Homo sapiens mRNA; cDNA DKFZp547K1410 (from clone DKFZp547K1410).
AK027766 - Homo sapiens cDNA FLJ14860 fis, clone PLACE1001705.
JD158376 - Sequence 139400 from Patent EP1572962.
JD383524 - Sequence 364548 from Patent EP1572962.
JD104590 - Sequence 85614 from Patent EP1572962.
JD424376 - Sequence 405400 from Patent EP1572962.
JD292347 - Sequence 273371 from Patent EP1572962.
JD432764 - Sequence 413788 from Patent EP1572962.
JD359788 - Sequence 340812 from Patent EP1572962.
JD412247 - Sequence 393271 from Patent EP1572962.
JD342880 - Sequence 323904 from Patent EP1572962.
JD386865 - Sequence 367889 from Patent EP1572962.
JD355291 - Sequence 336315 from Patent EP1572962.
DQ599596 - Homo sapiens piRNA piR-37662, complete sequence.
JD439128 - Sequence 420152 from Patent EP1572962.
JD383071 - Sequence 364095 from Patent EP1572962.
JD430873 - Sequence 411897 from Patent EP1572962.
JD328694 - Sequence 309718 from Patent EP1572962.
JD076573 - Sequence 57597 from Patent EP1572962.
JD447070 - Sequence 428094 from Patent EP1572962.
JD344667 - Sequence 325691 from Patent EP1572962.
JD443372 - Sequence 424396 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000441174.1, ENST00000441174.2, ENST00000441174.3, ENST00000441174.4, ENST00000441174.5, ENST00000441174.6, ENST00000441174.7, NIAM, NM_032811, Q3YBR2, Q53GJ5, Q66ZJ6, Q69YS7, Q8TCS4, Q8TEI4, Q96SV0, TBRG1_HUMAN, uc320jhr.1, uc320jhr.2
UCSC ID: ENST00000441174.8_4
RefSeq Accession: NM_032811.3
Protein: Q3YBR2 (aka TBRG1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.