Human Gene SUCLG1 (ENST00000393868.7_7) from GENCODE V47lift37
  Description: succinate-CoA ligase GDP/ADP-forming subunit alpha (from RefSeq NM_003849.4)
Gencode Transcript: ENST00000393868.7_7
Gencode Gene: ENSG00000163541.12_16
Transcript (Including UTRs)
   Position: hg19 chr2:84,650,652-84,686,404 Size: 35,753 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr2:84,650,870-84,686,393 Size: 35,524 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:84,650,652-84,686,404)mRNA (may differ from genome)Protein (346 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SUCA_HUMAN
DESCRIPTION: RecName: Full=Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial; EC=6.2.1.4; EC=6.2.1.5; AltName: Full=Succinyl-CoA synthetase subunit alpha; Short=SCS-alpha; Flags: Precursor;
FUNCTION: Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity (By similarity).
CATALYTIC ACTIVITY: GTP + succinate + CoA = GDP + phosphate + succinyl-CoA.
CATALYTIC ACTIVITY: ATP + succinate + CoA = ADP + phosphate + succinyl-CoA.
PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle.
SUBUNIT: Heterodimer of an alpha and a beta subunit.
SUBCELLULAR LOCATION: Mitochondrion.
DISEASE: Defects in SUCLG1 are the cause of mitochondrial DNA depletion syndrome type 9 (MTDPS9) [MIM:245400]. A severe disorder due to mitochondrial dysfunction. It is characterized by infantile onset of hypotonia, lactic acidosis, severe psychomotor retardation, progressive neurologic deterioration, and excretion of methylmalonic acid.
SIMILARITY: Belongs to the succinate/malate CoA ligase alpha subunit family.
SEQUENCE CAUTION: Sequence=AAD17940.2; Type=Erroneous initiation; Sequence=AAH00504.1; Type=Erroneous initiation; Sequence=CAA92426.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SUCLG1
Diseases sorted by gene-association score: mitochondrial dna depletion syndrome 9* (1580), fatal infantile lactic acidosis* (130), mitochondrial dna depletion syndrome, encephalomyopathic form* (100), suclg1-related mitochondrial dna depletion syndrome, encephalomyopathic form, with mild methylmalonic aciduria* (100), succinate-coa ligase deficiency (18), lactic acidosis (16), hemorrhoid (7), methylmalonic acidemia (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 75.80 RPKM in Heart - Left Ventricle
Total median expression: 1507.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -46.10218-0.211 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017440 - Cit_synth/succinyl-CoA_lig_AS
IPR003781 - CoA-bd
IPR005810 - CoA_lig_alpha
IPR005811 - CoA_ligase
IPR016040 - NAD(P)-bd_dom
IPR016102 - Succinyl-CoA_synth-like

Pfam Domains:
PF00549 - CoA-ligase
PF02629 - CoA binding domain
PF13607 - Succinyl-CoA ligase like flavodoxin domain

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains
52210 - Succinyl-CoA synthetase domains

ModBase Predicted Comparative 3D Structure on P53597
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003723 RNA binding
GO:0003824 catalytic activity
GO:0004775 succinate-CoA ligase (ADP-forming) activity
GO:0004776 succinate-CoA ligase (GDP-forming) activity
GO:0016874 ligase activity
GO:0048037 cofactor binding

Biological Process:
GO:0006099 tricarboxylic acid cycle
GO:0008152 metabolic process

Cellular Component:
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
GO:0005829 cytosol
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  LF207202 - JP 2014500723-A/14705: Polycomb-Associated Non-Coding RNAs.
BC000504 - Homo sapiens succinate-CoA ligase, alpha subunit, mRNA (cDNA clone MGC:8465 IMAGE:2821634), complete cds.
AK291082 - Homo sapiens cDNA FLJ76284 complete cds, highly similar to Homo sapiens succinate-CoA ligase, GDP-forming, alpha subunit (SUCLG1), mRNA.
AF104921 - Homo sapiens succinyl-CoA synthetase alpha subunit (SUCLA1) mRNA, complete cds.
KJ901912 - Synthetic construct Homo sapiens clone ccsbBroadEn_11306 SUCLG1 gene, encodes complete protein.
AK225737 - Homo sapiens mRNA for Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor variant, clone: TST08645.
AK313290 - Homo sapiens cDNA, FLJ93802, highly similar to Homo sapiens succinate-CoA ligase, GDP-forming, alpha subunit (SUCLG1), mRNA.
CR457139 - Homo sapiens full open reading frame cDNA clone RZPDo834C0412D for gene SUCLG1, succinate-CoA ligase, GDP-forming, alpha subunit; complete cds, incl. stopcodon.
AK296741 - Homo sapiens cDNA FLJ56352 complete cds, highly similar to Succinyl-CoA ligase (GDP-forming) subunit alpha, mitochondrial precursor (EC 6.2.1.4).
Z68204 - H.sapiens mRNA for succinyl CoA synthetase.
MA442779 - JP 2018138019-A/14705: Polycomb-Associated Non-Coding RNAs.
AK024767 - Homo sapiens cDNA: FLJ21114 fis, clone CAS05482, highly similar to AF104921 Homo sapiens succinyl-CoA synthetase alpha subunit (SUCLA1) mRNA.
AK125502 - Homo sapiens cDNA FLJ43513 fis, clone PERIC2005305, highly similar to Homo sapiens succinyl-CoA synthetase alpha subunit (SUCLA1) mRNA.
LF363095 - JP 2014500723-A/170598: Polycomb-Associated Non-Coding RNAs.
JD559640 - Sequence 540664 from Patent EP1572962.
LF363093 - JP 2014500723-A/170596: Polycomb-Associated Non-Coding RNAs.
DQ599582 - Homo sapiens piRNA piR-37648, complete sequence.
MA598672 - JP 2018138019-A/170598: Polycomb-Associated Non-Coding RNAs.
MA598670 - JP 2018138019-A/170596: Polycomb-Associated Non-Coding RNAs.
LF363080 - JP 2014500723-A/170583: Polycomb-Associated Non-Coding RNAs.
MA598657 - JP 2018138019-A/170583: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY66-398 - TCA cycle
PWY66-407 - superpathway of conversion of glucose to acetyl CoA and entry into the TCA cycle

Reactome (by CSHL, EBI, and GO)

Protein P53597 (Reactome details) participates in the following event(s):

R-HSA-70997 ADP + Orthophosphate + Succinyl-CoA <=> ATP + Succinate + CoA
R-HSA-71775 GDP + Orthophosphate + Succinyl-CoA <=> GTP + Succinate + CoA
R-HSA-71403 Citric acid cycle (TCA cycle)
R-HSA-71406 Pyruvate metabolism and Citric Acid (TCA) cycle
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000393868.1, ENST00000393868.2, ENST00000393868.3, ENST00000393868.4, ENST00000393868.5, ENST00000393868.6, NM_003849, P53597, Q9BWB0, Q9UNP6, SUCA_HUMAN, SUCLG1 , uc318weo.1, uc318weo.2
UCSC ID: ENST00000393868.7_7
RefSeq Accession: NM_003849.4
Protein: P53597 (aka SUCA_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene SUCLG1:
suclg1-mtddepl (SUCLG1-Related Mitochondrial DNA Depletion Syndrome, Encephalomyopathic Form with Methylmalonic Aciduria)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.