Human Gene STK11 (ENST00000326873.12_8) from GENCODE V47lift37
  Description: serine/threonine kinase 11 (from RefSeq NM_000455.5)
Gencode Transcript: ENST00000326873.12_8
Gencode Gene: ENSG00000118046.18_16
Transcript (Including UTRs)
   Position: hg19 chr19:1,205,777-1,228,430 Size: 22,654 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr19:1,206,913-1,226,646 Size: 19,734 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:1,205,777-1,228,430)mRNA (may differ from genome)Protein (433 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STK11_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase STK11; EC=2.7.11.1; AltName: Full=Liver kinase B1; Short=LKB1; Short=hLKB1; AltName: Full=Renal carcinoma antigen NY-REN-19;
FUNCTION: Tumor suppressor serine/threonine-protein kinase that controls the activity of AMP-activated protein kinase (AMPK) family members, thereby playing a role in various processes such as cell metabolism, cell polarity, apoptosis and DNA damage response. Acts by phosphorylating the T-loop of AMPK family proteins, leading to promote their activity: phosphorylates PRKAA1, PRKAA2, BRSK1, BRSK2, MARK1, MARK2, MARK3, MARK4, NUAK1, NUAK2, SIK1, SIK2, SIK3 and SNRK but not MELK. Also phosphorylates non-AMPK family proteins such as STRADA and possibly p53/TP53. Acts as a key upstream regulator of AMPK by mediating phosphorylation and activation of AMPK catalytic subunits PRKAA1 and PRKAA2: it thereby regulates inhibition of signaling pathways that promote cell growth and proliferation when energy levels are low, glucose homeostasis in liver, activation of autophagy when cells undergo nutrient deprivation, B-cell differentiation in the germinal center in response to DNA damage. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton. Required for cortical neurons polarization by mediating phosphorylation and activation of BRSK1 and BRSK2, leading to axon initiation and specification. Involved in DNA damage response: interacts with p53/TP53 and recruited to the CDKN1A/WAF1 promoter to participate in transcription activation. Able to phosphorylate p53/TP53; the relevance of such result in vivo is however unclear and phosphorylation may be indirect and mediated by downstream STK11/LKB1 kinase NUAK1 Also acts as a mediator p53/TP53-dependent apoptosis via interaction with p53/TP53: translocates to mitochondrion during apoptosis and regulates p53/TP53-dependent apoptosis pathways.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium or Manganese.
ENZYME REGULATION: Activated by forming a complex with STRAD (STRADA or STRADB) and CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta): STRADA (or STRADB)-binding promotes a conformational change of STK11/LKB1 in an active conformation, which is stabilized by CAB39/MO25alpha (or CAB39L/MO25beta) interacting with the STK11/LKB1 activation loop.
SUBUNIT: Catalytic component of a trimeric complex composed of STK11/LKB1, STRAD (STRADA or STRADB) and CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta): the complex tethers STK11/LKB1 in the cytoplasm and stimulates its catalytic activity. Found in a ternary complex composed of SMAD4, STK11/LKB1 and STK11IP. Interacts with p53/TP53, SMAD4, STK11IP and WDR6.
INTERACTION: Q9Y376:CAB39; NbExp=4; IntAct=EBI-306838, EBI-306905; Q96L34:MARK4; NbExp=2; IntAct=EBI-306838, EBI-302319; Q7RTN6:STRADA; NbExp=9; IntAct=EBI-306838, EBI-1109114; Q9C0K7:STRADB; NbExp=6; IntAct=EBI-306838, EBI-306893; Q8NFZ5:TNIP2; NbExp=5; IntAct=EBI-306838, EBI-359372; Q9NNW5:WDR6; NbExp=3; IntAct=EBI-306838, EBI-1568315;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Membrane (By similarity). Mitochondrion. Note=A small fraction localizes at membranes (By similarity). Relocates to the cytoplasm when bound to STRAD (STRADA or STRADB) and CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta). Translocates to mitochondrion during apoptosis.
TISSUE SPECIFICITY: Ubiquitously expressed. Strongest expression in testis and fetal liver.
PTM: Phosphorylated by ATM at Thr-363 following ionizing radiations (IR). Phosphorylation at Ser-428 by RPS6KA1 and/or some PKA is required to inhibit cell growth. Phosphorylation at Ser-428 is also required during neuronal polarization to mediate phosphorylation of BRSK1 and BRSK2 (By similarity).
DISEASE: Defects in STK11 are a cause of Peutz-Jeghers syndrome (PJS) [MIM:175200]. PJS is a rare hereditary disease in which there is predisposition to benign and malignant tumors of many organ systems. PJS is an autosomal dominant disorder characterized by melanocytic macules of the lips, multiple gastrointestinal hamartomatous polyps and an increased risk for various neoplasms, including gastrointestinal cancer.
DISEASE: Defects in STK11 have been associated with testicular germ cell tumor (TGCT) [MIM:273300]. A common solid malignancy in males. Germ cell tumors of the testis constitute 95% of all testicular neoplasms.
DISEASE: Note=Defects in STK11 are associated with some sporadic cancers, especially lung cancers. Frequently mutated and inactivated in non-small cell lung cancer (NSCLC). Defects promote lung cancerigenesis process, especially lung cancer progression and metastasis. Confers lung adenocarcinoma the ability to trans- differentiate into squamous cell carcinoma. Also able to promotes lung cancer metastasis, via both cancer-cell autonomous and non- cancer-cell autonomous mechanisms.
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. LKB1 subfamily.
SIMILARITY: Contains 1 protein kinase domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/STK11ID292.html";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/STK11";
WEB RESOURCE: Name=Wikipedia; Note=PJS entry; URL="http://en.wikipedia.org/wiki/PJS";

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: STK11
Diseases sorted by gene-association score: peutz-jeghers syndrome* (1738), testicular germ cell tumor* (1229), pancreatic cancer* (593), malignant melanoma, somatic* (231), intussusception (29), testicular cancer (19), lung cancer (17), polyhydramnios, megalencephaly, and symptomatic epilepsy (13), polyposis, juvenile intestinal (13), cervical adenoma malignum (11), cervical mucinous adenocarcinoma (10), cowden disease (10), papillary hidradenoma (8), polyhydramnios (8), vaginal benign neoplasm (8), vaginal adenoma (8), vaginal tubulovillous adenoma (8), melanocytic nevus syndrome, congenital, somatic (8), congenital heart defects, hamartomas of tongue, and polysyndactyly (7), lung cancer susceptibility 3 (7), large cell carcinoma (6), bardet-biedl syndrome 19 (6), triple-receptor negative breast cancer (5), megalencephaly (5), jejunal adenocarcinoma (5), dowling-degos disease 1 (4), colorectal cancer (3), hereditary breast ovarian cancer (3), tuberous sclerosis (3), breast cancer (2), intestinal disease (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C059514 resveratrol
  • C458525 STO 609
  • D019821 Simvastatin
  • C006780 bisphenol A
  • C516138 (6-(4-(2-piperidin-1-ylethoxy)phenyl))-3-pyridin-4-ylpyrazolo(1,5-a)pyrimidine
  • C569670 1-(4-((2-(2-aminopyrimidin-5-yl)-7-methyl-4-morpholinothieno(3,2-d)pyrimidin-6-yl)methyl)piperazin-1-yl)-2-hydroxypropan-1-one
  • C025160 3-aminobenzamide
  • C027576 4-hydroxy-2-nonenal
  • C438505 6,8-diallyl 5,7-dihydroxy 2-(2-allyl 3-hydroxy 4-methoxyphenyl)1-H benzo(b)pyran-4-one
  • D000082 Acetaminophen
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 86.55 RPKM in Testis
Total median expression: 997.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -660.301136-0.581 Picture PostScript Text
3' UTR -411.80855-0.482 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020636 - Ca/CaM-dep_Ca-dep_prot_Kinase
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2WTK - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q15831
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0002039 p53 binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0030275 LRR domain binding
GO:0030295 protein kinase activator activity
GO:0046872 metal ion binding

Biological Process:
GO:0001558 regulation of cell growth
GO:0001894 tissue homeostasis
GO:0001944 vasculature development
GO:0006468 protein phosphorylation
GO:0006914 autophagy
GO:0006915 apoptotic process
GO:0006974 cellular response to DNA damage stimulus
GO:0007049 cell cycle
GO:0007050 cell cycle arrest
GO:0007283 spermatogenesis
GO:0007399 nervous system development
GO:0007409 axonogenesis
GO:0008285 negative regulation of cell proliferation
GO:0010212 response to ionizing radiation
GO:0010508 positive regulation of autophagy
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0018107 peptidyl-threonine phosphorylation
GO:0030010 establishment of cell polarity
GO:0030111 regulation of Wnt signaling pathway
GO:0030154 cell differentiation
GO:0030308 negative regulation of cell growth
GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway
GO:0032147 activation of protein kinase activity
GO:0036399 TCR signalosome assembly
GO:0042593 glucose homeostasis
GO:0043276 anoikis
GO:0045059 positive thymic T cell selection
GO:0046777 protein autophosphorylation
GO:0048814 regulation of dendrite morphogenesis
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0050772 positive regulation of axonogenesis
GO:0050852 T cell receptor signaling pathway
GO:0051055 negative regulation of lipid biosynthetic process
GO:0051645 Golgi localization
GO:0051896 regulation of protein kinase B signaling
GO:0060070 canonical Wnt signaling pathway
GO:0060770 negative regulation of epithelial cell proliferation involved in prostate gland development
GO:0071493 cellular response to UV-B
GO:0071902 positive regulation of protein serine/threonine kinase activity
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator
GO:0097484 dendrite extension
GO:1900182 positive regulation of protein localization to nucleus
GO:1901796 regulation of signal transduction by p53 class mediator
GO:1904262 negative regulation of TORC1 signaling

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0016020 membrane
GO:0036398 TCR signalosome
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF384660 - JP 2014500723-A/192163: Polycomb-Associated Non-Coding RNAs.
AF217978 - Homo sapiens clone PP1471 unknown mRNA.
BC007981 - Homo sapiens serine/threonine kinase 11, mRNA (cDNA clone MGC:16254 IMAGE:3689780), complete cds.
AF035625 - Homo sapiens serine threonine kinase 11 (STK11) mRNA, complete cds.
BC019334 - Homo sapiens serine/threonine kinase 11, mRNA (cDNA clone MGC:12715 IMAGE:3946005), complete cds.
JD565778 - Sequence 546802 from Patent EP1572962.
AK314858 - Homo sapiens cDNA, FLJ95757, Homo sapiens serine/threonine kinase 11 (Peutz-Jeghers syndrome)(STK11), mRNA.
AB209553 - Homo sapiens mRNA for serine/threonine protein kinase 11 variant protein.
EF644172 - Homo sapiens polarization-related protein LKB1 mRNA, complete cds.
DQ893232 - Synthetic construct clone IMAGE:100005862; FLH195454.01X; RZPDo839C07152D serine/threonine kinase 11 (STK11) gene, encodes complete protein.
DQ896561 - Synthetic construct Homo sapiens clone IMAGE:100011021; FLH195450.01L; RZPDo839C07151D serine/threonine kinase 11 (STK11) gene, encodes complete protein.
CU675883 - Synthetic construct Homo sapiens gateway clone IMAGE:100019375 5' read STK11 mRNA.
AB528360 - Synthetic construct DNA, clone: pF1KB6616, Homo sapiens STK11 gene for serine/threonine kinase 11, without stop codon, in Flexi system.
KJ892219 - Synthetic construct Homo sapiens clone ccsbBroadEn_01613 STK11 gene, encodes complete protein.
KJ905324 - Synthetic construct Homo sapiens clone ccsbBroadEn_14853 STK11 gene, encodes complete protein.
KR710123 - Synthetic construct Homo sapiens clone CCSBHm_00009903 STK11 (STK11) mRNA, encodes complete protein.
KR710124 - Synthetic construct Homo sapiens clone CCSBHm_00009937 STK11 (STK11) mRNA, encodes complete protein.
KR710125 - Synthetic construct Homo sapiens clone CCSBHm_00009943 STK11 (STK11) mRNA, encodes complete protein.
KR710126 - Synthetic construct Homo sapiens clone CCSBHm_00009966 STK11 (STK11) mRNA, encodes complete protein.
KU178339 - Homo sapiens serine/threonine kinase 11 isoform 1 (STK11) mRNA, partial cds.
KU178340 - Homo sapiens serine/threonine kinase 11 isoform 3 (STK11) mRNA, partial cds, alternatively spliced.
U63333 - Human serine/threonine protein kinase (LKB1) mRNA, complete cds.
BC146278 - Synthetic construct Homo sapiens clone IMAGE:100015240, MGC:180259 ephrin-A2 (EFNA2) mRNA, encodes complete protein.
BC148727 - Synthetic construct Homo sapiens clone IMAGE:100015816, MGC:183183 ephrin-A2 (EFNA2) mRNA, encodes complete protein.
LF323075 - JP 2014500723-A/130578: Polycomb-Associated Non-Coding RNAs.
GU573916 - Homo sapiens serine/threonine kinase 11 (STK11) mRNA, partial cds.
AJ844634 - Homo sapiens partial mRNA for serine/threonine kinase 11 (STK11 gene).
LF323076 - JP 2014500723-A/130579: Polycomb-Associated Non-Coding RNAs.
LF323077 - JP 2014500723-A/130580: Polycomb-Associated Non-Coding RNAs.
AK128518 - Homo sapiens cDNA FLJ46676 fis, clone TRACH3009956, highly similar to Homo sapiens serine/threonine kinase 11 (Peutz-Jeghers syndrome) (STK11).
LF208812 - JP 2014500723-A/16315: Polycomb-Associated Non-Coding RNAs.
LF323078 - JP 2014500723-A/130581: Polycomb-Associated Non-Coding RNAs.
JD124928 - Sequence 105952 from Patent EP1572962.
JD108674 - Sequence 89698 from Patent EP1572962.
JD149894 - Sequence 130918 from Patent EP1572962.
JD187397 - Sequence 168421 from Patent EP1572962.
LF323079 - JP 2014500723-A/130582: Polycomb-Associated Non-Coding RNAs.
JD129376 - Sequence 110400 from Patent EP1572962.
LF323080 - JP 2014500723-A/130583: Polycomb-Associated Non-Coding RNAs.
JD552803 - Sequence 533827 from Patent EP1572962.
MA620237 - JP 2018138019-A/192163: Polycomb-Associated Non-Coding RNAs.
MA558652 - JP 2018138019-A/130578: Polycomb-Associated Non-Coding RNAs.
MA558653 - JP 2018138019-A/130579: Polycomb-Associated Non-Coding RNAs.
MA558654 - JP 2018138019-A/130580: Polycomb-Associated Non-Coding RNAs.
MA558655 - JP 2018138019-A/130581: Polycomb-Associated Non-Coding RNAs.
MA558656 - JP 2018138019-A/130582: Polycomb-Associated Non-Coding RNAs.
MA558657 - JP 2018138019-A/130583: Polycomb-Associated Non-Coding RNAs.
MA444389 - JP 2018138019-A/16315: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15831 (Reactome details) participates in the following event(s):

R-HSA-6805035 TP53 binds STK11 and NUAK1
R-HSA-3222020 NUAK1 phosphorylates TP53
R-HSA-380942 LKB1 forms a trimeric complex with STRAD and MO25
R-HSA-3222006 STK11 (LKB1) phosphorylates NUAK1
R-HSA-164151 LKB1 phosphorylates the alpha subunit of AMPK heterotrimer
R-HSA-200421 Activation of cytosolic AMPK by phosphorylation
R-HSA-6804756 Regulation of TP53 Activity through Phosphorylation
R-HSA-380972 Energy dependent regulation of mTOR by LKB1-AMPK
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-163680 AMPK inhibits chREBP transcriptional activation activity
R-HSA-165159 mTOR signalling
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-163685 Energy Metabolism
R-HSA-162582 Signal Transduction
R-HSA-212436 Generic Transcription Pathway
R-HSA-1430728 Metabolism
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B2RBX7, E7EW76, ENST00000326873.1, ENST00000326873.10, ENST00000326873.11, ENST00000326873.2, ENST00000326873.3, ENST00000326873.4, ENST00000326873.5, ENST00000326873.6, ENST00000326873.7, ENST00000326873.8, ENST00000326873.9, LKB1, NM_000455, PJS, Q15831, STK11 , STK11_HUMAN, uc317sdz.1, uc317sdz.2
UCSC ID: ENST00000326873.12_8
RefSeq Accession: NM_000455.5
Protein: Q15831 (aka STK11_HUMAN or STKB_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene STK11:
pjs (Peutz-Jeghers Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.