Human Gene SRPRB (ENST00000678299.1_4) from GENCODE V47lift37
  Description: SRP receptor subunit beta, transcript variant 2 (from RefSeq NR_163491.1)
Gencode Transcript: ENST00000678299.1_4
Gencode Gene: ENSG00000144867.13_15
Transcript (Including UTRs)
   Position: hg19 chr3:133,524,659-133,540,336 Size: 15,678 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr3:133,524,693-133,538,610 Size: 13,918 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:133,524,659-133,540,336)mRNA (may differ from genome)Protein (271 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SRPRB_HUMAN
DESCRIPTION: RecName: Full=Signal recognition particle receptor subunit beta; Short=SR-beta; AltName: Full=Protein APMCF1;
FUNCTION: Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system. Has GTPase activity. May mediate the membrane association of SRPR (By similarity).
SUBUNIT: Heterodimer with SRPR (By similarity).
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass membrane protein (By similarity).
SIMILARITY: Belongs to the SRP receptor beta subunit family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D002994 Clofibrate
  • D016572 Cyclosporine
  • C028474 1,4-bis(2-(3,5-dichloropyridyloxy))benzene
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • C547126 AZM551248
  • D000082 Acetaminophen
  • D000638 Amiodarone
  • D001553 Benzbromarone
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -6.1034-0.179 Picture PostScript Text
3' UTR -507.601726-0.294 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024156 - Small_GTPase_ARF
IPR019009 - SRP_receptor_beta_su

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF01926 - 50S ribosome-binding GTPase
PF02421 - Ferrous iron transport protein B
PF09439 - Signal recognition particle receptor beta subunit

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q9Y5M8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005047 signal recognition particle binding
GO:0005525 GTP binding

Biological Process:
GO:0036498 IRE1-mediated unfolded protein response

Cellular Component:
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005785 signal recognition particle receptor complex
GO:0005789 endoplasmic reticulum membrane
GO:0005881 cytoplasmic microtubule
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LF208598 - JP 2014500723-A/16101: Polycomb-Associated Non-Coding RNAs.
AK075531 - Homo sapiens cDNA PSEC0230 fis, clone HEMBA1006391, highly similar to SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT.
BC063001 - Homo sapiens signal recognition particle receptor, B subunit, mRNA (cDNA clone MGC:74809 IMAGE:5185997), complete cds.
AF086914 - Homo sapiens signal recognition particle receptor beta subunit mRNA, complete cds.
AF141882 - Homo sapiens APMCF1 (APMCF1) mRNA, complete cds.
AK027525 - Homo sapiens cDNA FLJ14619 fis, clone NT2RP1001569, highly similar to SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT.
AB464203 - Synthetic construct DNA, clone: pF1KB8140, Homo sapiens SRPRB gene for signal recognition particle receptor, B subunit, without stop codon, in Flexi system.
CU688042 - Synthetic construct Homo sapiens gateway clone IMAGE:100021629 5' read SRPRB mRNA.
HQ448094 - Synthetic construct Homo sapiens clone IMAGE:100071474; CCSB012391_01 signal recognition particle receptor, B subunit (SRPRB) gene, encodes complete protein.
KJ894464 - Synthetic construct Homo sapiens clone ccsbBroadEn_03858 SRPRB gene, encodes complete protein.
BC065299 - Homo sapiens signal recognition particle receptor, B subunit, mRNA (cDNA clone MGC:74810 IMAGE:6146939), complete cds.
LF378348 - JP 2014500723-A/185851: Polycomb-Associated Non-Coding RNAs.
AK027307 - Homo sapiens cDNA FLJ14401 fis, clone HEMBA1003773, weakly similar to Mus musculus signal recognition particle receptor beta subunit mRNA.
DQ601932 - Homo sapiens piRNA piR-39998, complete sequence.
LF378345 - JP 2014500723-A/185848: Polycomb-Associated Non-Coding RNAs.
LF378341 - JP 2014500723-A/185844: Polycomb-Associated Non-Coding RNAs.
JD549999 - Sequence 531023 from Patent EP1572962.
JD088073 - Sequence 69097 from Patent EP1572962.
BC019005 - Homo sapiens cDNA clone IMAGE:2988085, partial cds.
JD109462 - Sequence 90486 from Patent EP1572962.
JD171056 - Sequence 152080 from Patent EP1572962.
JD184307 - Sequence 165331 from Patent EP1572962.
JD465520 - Sequence 446544 from Patent EP1572962.
LF378340 - JP 2014500723-A/185843: Polycomb-Associated Non-Coding RNAs.
MA444175 - JP 2018138019-A/16101: Polycomb-Associated Non-Coding RNAs.
MA613925 - JP 2018138019-A/185851: Polycomb-Associated Non-Coding RNAs.
MA613922 - JP 2018138019-A/185848: Polycomb-Associated Non-Coding RNAs.
MA613918 - JP 2018138019-A/185844: Polycomb-Associated Non-Coding RNAs.
MA613917 - JP 2018138019-A/185843: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y5M8 (Reactome details) participates in the following event(s):

R-HSA-1799330 The SRP receptor binds the SRP:nascent peptide:ribosome complex
R-HSA-1799326 Signal-containing nascent peptide translocates to endoplasmic reticulum
R-HSA-381038 XBP1(S) activates chaperone genes
R-HSA-1799339 SRP-dependent cotranslational protein targeting to membrane
R-HSA-381070 IRE1alpha activates chaperones
R-HSA-72766 Translation
R-HSA-381119 Unfolded Protein Response (UPR)
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: NR_163491, PSEC0230, Q6P595, Q8N2D8, Q9Y5M8, SRPRB_HUMAN, uc330dvq.1, uc330dvq.2
UCSC ID: ENST00000678299.1_4
RefSeq Accession: NM_001379313.1
Protein: Q9Y5M8 (aka SRPRB_HUMAN or SRPB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
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