Human Gene SLC2A1 (ENST00000426263.10_9) from GENCODE V47lift37
  Description: solute carrier family 2 member 1 (from RefSeq NM_006516.4)
Gencode Transcript: ENST00000426263.10_9
Gencode Gene: ENSG00000117394.24_14
Transcript (Including UTRs)
   Position: hg19 chr1:43,391,024-43,424,539 Size: 33,516 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr1:43,392,712-43,424,322 Size: 31,611 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:43,391,024-43,424,539)mRNA (may differ from genome)Protein (492 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GTR1_HUMAN
DESCRIPTION: RecName: Full=Solute carrier family 2, facilitated glucose transporter member 1; AltName: Full=Glucose transporter type 1, erythrocyte/brain; Short=GLUT-1; AltName: Full=HepG2 glucose transporter;
FUNCTION: Facilitative glucose transporter. This isoform may be responsible for constitutive or basal glucose uptake. Has a very broad substrate specificity; can transport a wide range of aldoses including both pentoses and hexoses.
INTERACTION: Self; NbExp=3; IntAct=EBI-717153, EBI-717153;
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (By similarity). Melanosome. Note=Localizes primarily at the cell surface (By similarity). Identified by mass spectrometry in melanosome fractions from stage I to stage IV.
TISSUE SPECIFICITY: Expressed at variable levels in many human tissues.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
DISEASE: Defects in SLC2A1 are the cause of GLUT1 deficiency syndrome type 1 (GLUT1DS1) [MIM:606777]; also known as blood-brain barrier glucose transport defect. A neurologic disorder showing wide phenotypic variability. The most severe 'classic' phenotype comprises infantile-onset epileptic encephalopathy associated with delayed development, acquired microcephaly, motor incoordination, and spasticity. Onset of seizures, usually characterized by apneic episodes, staring spells, and episodic eye movements, occurs within the first 4 months of life. Other paroxysmal findings include intermittent ataxia, confusion, lethargy, sleep disturbance, and headache. Varying degrees of cognitive impairment can occur, ranging from learning disabilities to severe mental retardation.
DISEASE: Defects in SLC2A1 are the cause of GLUT1 deficiency syndrome type 2 (GLUT1DS2) [MIM:612126]. A clinically variable disorder characterized primarily by onset in childhood of paroxysmal exercise-induced dyskinesia. The dyskinesia involves transient abnormal involuntary movements, such as dystonia and choreoathetosis, induced by exercise or exertion, and affecting the exercised limbs. Some patients may also have epilepsy, most commonly childhood absence epilepsy. Mild mental retardation may also occur. In some patients involuntary exertion-induced dystonic, choreoathetotic, and ballistic movements may be associated with macrocytic hemolytic anemia.
SIMILARITY: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. Glucose transporter subfamily.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/SLC2A1";
WEB RESOURCE: Name=Wikipedia; Note=GLUT1 entry; URL="http://en.wikipedia.org/wiki/GLUT1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SLC2A1
Diseases sorted by gene-association score: dystonia 9* (1678), glut1 deficiency syndrome 2, childhood onset* (1650), stomatin-deficient cryohydrocytosis with neurologic defects* (1580), glut1 deficiency syndrome 1, infantile onset, severe* (1550), epilepsy, idiopathic generalized 12* (1306), glucose transporter type 1 deficiency syndrome* (518), myoclonus* (400), dystonia-11, myoclonic* (292), ataxia-oculomotor apraxia 3* (283), ataxia and polyneuropathy, adult-onset* (283), microcephaly* (244), childhood absence epilepsy* (217), ataxia* (204), cerebellar ataxia* (163), seizure disorder* (111), alacrima, achalasia, and mental retardation syndrome* (107), visual epilepsy* (87), intellectual disability* (77), perineurioma (34), cryohydrocytosis (26), early onset absence epilepsy (26), intraneural perineurioma (24), paroxysmal choreoathetosis (22), paroxysmal exertion-induced dyskinesia (20), spasticity (18), neonatal meningitis (17), skin hemangioma (17), t-cell leukemia (16), renal pelvis adenocarcinoma (15), metagonimiasis (15), capillary hemangioma (15), hemangioma (14), epilepsy (13), myoclonic astatic epilepsy (13), renal glucosuria (11), alternating hemiplegia of childhood (11), necrobiosis lipoidica (11), hemiplegia (10), vascular malformation (10), angiokeratoma circumscriptum (10), hemangioblastoma (10), deep angioma (10), integumentary system benign neoplasm (10), eosinophilic variant of chromophobe renal cell carcinoma (8), intramuscular hemangioma (8), ameloblastic carcinoma (8), verrucous carcinoma (7), atrophy of prostate (7), breast mucinous carcinoma (7), cardiovascular cancer (6), renal pelvis carcinoma (6), childhood electroclinical syndrome (6), clear cell adenofibroma (6), chondroblastoma (5), oculogyric crisis (5), human t-cell leukemia virus type 1 (5), hemiplegic migraine (5), cellular schwannoma (5), thyroid cancer (5), focal epilepsy (5), movement disease (5), cardiomyopathy, hypertrophic, 2 (5), spindle cell synovial sarcoma (5), chronic salpingitis (4), lennox-gastaut syndrome (4), testis seminoma (4), glomangioma (4), cardiovascular organ benign neoplasm (4), benign perivascular tumor (4), xanthogranulomatous cholecystitis (4), dystonia, dopa-responsive, with or without hyperphenylalaninemia (4), hyperglycemia (4), renal cell carcinoma (4), disuse amblyopia (4), serine deficiency (4), lung cancer (2), oral squamous cell carcinoma (2), diabetes mellitus, noninsulin-dependent (2), ovarian cancer, somatic (1), diabetes mellitus, insulin-dependent (1), differentiated thyroid carcinoma (1), meningioma, familial (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 235.86 RPKM in Nerve - Tibial
Total median expression: 1323.56 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -81.00217-0.373 Picture PostScript Text
3' UTR -504.301688-0.299 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002439 - Glu_transpt_1
IPR020846 - MFS_dom
IPR016196 - MFS_dom_general_subst_transpt
IPR005828 - Sub_transporter
IPR003663 - Sugar/inositol_transpt
IPR005829 - Sugar_transporter_CS

Pfam Domains:
PF00083 - Sugar (and other) transporter
PF07690 - Major Facilitator Superfamily

SCOP Domains:
103473 - MFS general substrate transporter

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1SUK - Model


ModBase Predicted Comparative 3D Structure on P11166
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005215 transporter activity
GO:0005355 glucose transmembrane transporter activity
GO:0005515 protein binding
GO:0019900 kinase binding
GO:0022857 transmembrane transporter activity
GO:0033300 dehydroascorbic acid transporter activity
GO:0042802 identical protein binding
GO:0042910 xenobiotic transporter activity
GO:0043621 protein self-association
GO:0055056 D-glucose transmembrane transporter activity

Biological Process:
GO:0005989 lactose biosynthetic process
GO:0006970 response to osmotic stress
GO:0007565 female pregnancy
GO:0008643 carbohydrate transport
GO:0010827 regulation of glucose transport
GO:0019852 L-ascorbic acid metabolic process
GO:0021987 cerebral cortex development
GO:0032868 response to insulin
GO:0042149 cellular response to glucose starvation
GO:0042908 xenobiotic transport
GO:0050796 regulation of insulin secretion
GO:0055085 transmembrane transport
GO:0065003 macromolecular complex assembly
GO:0070837 dehydroascorbic acid transport
GO:0071260 cellular response to mechanical stimulus
GO:0071474 cellular hyperosmotic response
GO:1904016 response to Thyroglobulin triiodothyronine
GO:1904659 glucose transmembrane transport

Cellular Component:
GO:0000139 Golgi membrane
GO:0001939 female pronucleus
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0005901 caveola
GO:0005911 cell-cell junction
GO:0014704 intercalated disc
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016323 basolateral plasma membrane
GO:0016324 apical plasma membrane
GO:0030018 Z disc
GO:0030496 midbody
GO:0030864 cortical actin cytoskeleton
GO:0031982 vesicle
GO:0042383 sarcolemma
GO:0042470 melanosome
GO:0045121 membrane raft
GO:0070062 extracellular exosome
GO:0072562 blood microparticle


-  Descriptions from all associated GenBank mRNAs
  LF206592 - JP 2014500723-A/14095: Polycomb-Associated Non-Coding RNAs.
HV708951 - JP 2012506450-A/49: Methods for treating eye disorders.
LF383902 - JP 2014500723-A/191405: Polycomb-Associated Non-Coding RNAs.
K03195 - Human (HepG2) glucose transporter gene mRNA, complete cds.
AK292791 - Homo sapiens cDNA FLJ77473 complete cds, highly similar to Homo sapiens solute carrier family 2 (facilitated glucose transporter), member 1 (SLC2A1), mRNA.
AK122999 - Homo sapiens cDNA FLJ16785 fis, clone NT2RI2015342, highly similar to Solute carrier family 2, facilitated glucose transporter member 1.
LF356407 - JP 2014500723-A/163910: Polycomb-Associated Non-Coding RNAs.
AF070544 - Homo sapiens clone 24567 glucose transporter glycoprotein (SGLT1) mRNA, partial cds.
JD438637 - Sequence 419661 from Patent EP1572962.
LF356406 - JP 2014500723-A/163909: Polycomb-Associated Non-Coding RNAs.
JD459178 - Sequence 440202 from Patent EP1572962.
JD385124 - Sequence 366148 from Patent EP1572962.
JD535857 - Sequence 516881 from Patent EP1572962.
JD067903 - Sequence 48927 from Patent EP1572962.
JD176863 - Sequence 157887 from Patent EP1572962.
JD215785 - Sequence 196809 from Patent EP1572962.
JD385459 - Sequence 366483 from Patent EP1572962.
JD167201 - Sequence 148225 from Patent EP1572962.
LF356405 - JP 2014500723-A/163908: Polycomb-Associated Non-Coding RNAs.
JD565070 - Sequence 546094 from Patent EP1572962.
BC118590 - Homo sapiens solute carrier family 2 (facilitated glucose transporter), member 1, mRNA (cDNA clone MGC:141896 IMAGE:40085221), complete cds.
BC121804 - Homo sapiens solute carrier family 2 (facilitated glucose transporter), member 1, mRNA (cDNA clone MGC:141895 IMAGE:40085220), complete cds.
AK293306 - Homo sapiens cDNA FLJ60414 complete cds, highly similar to Solute carrier family 2, facilitated glucose transporter member 1.
JD050399 - Sequence 31423 from Patent EP1572962.
LF356404 - JP 2014500723-A/163907: Polycomb-Associated Non-Coding RNAs.
JD280751 - Sequence 261775 from Patent EP1572962.
JD527475 - Sequence 508499 from Patent EP1572962.
AB208987 - Homo sapiens mRNA for solute carrier family 2 (facilitated glucose transporter), member 1 variant protein.
AK296736 - Homo sapiens cDNA FLJ55703 complete cds, highly similar to Solute carrier family 2, facilitated glucose transporter member 1.
JD349900 - Sequence 330924 from Patent EP1572962.
JD184510 - Sequence 165534 from Patent EP1572962.
LF356403 - JP 2014500723-A/163906: Polycomb-Associated Non-Coding RNAs.
JD217189 - Sequence 198213 from Patent EP1572962.
JD449082 - Sequence 430106 from Patent EP1572962.
JD274117 - Sequence 255141 from Patent EP1572962.
JD410726 - Sequence 391750 from Patent EP1572962.
LF356402 - JP 2014500723-A/163905: Polycomb-Associated Non-Coding RNAs.
AK312403 - Homo sapiens cDNA, FLJ92735, highly similar to Homo sapiens solute carrier family 2 (facilitated glucose transporter), member 1 (SLC2A1), mRNA.
KJ892146 - Synthetic construct Homo sapiens clone ccsbBroadEn_01540 SLC2A1 gene, encodes complete protein.
KR711967 - Synthetic construct Homo sapiens clone CCSBHm_00033132 SLC2A1 (SLC2A1) mRNA, encodes complete protein.
KR711968 - Synthetic construct Homo sapiens clone CCSBHm_00033144 SLC2A1 (SLC2A1) mRNA, encodes complete protein.
KR711969 - Synthetic construct Homo sapiens clone CCSBHm_00033151 SLC2A1 (SLC2A1) mRNA, encodes complete protein.
KR711970 - Synthetic construct Homo sapiens clone CCSBHm_00033157 SLC2A1 (SLC2A1) mRNA, encodes complete protein.
AB384810 - Synthetic construct DNA, clone: pF1KB3475, Homo sapiens SLC2A1 gene for solute carrier family 2, member 1, complete cds, without stop codon, in Flexi system.
LF356401 - JP 2014500723-A/163904: Polycomb-Associated Non-Coding RNAs.
AY034633 - Homo sapiens glucose transporter-like protein I (GLUT1) mRNA, partial cds.
LF356396 - JP 2014500723-A/163899: Polycomb-Associated Non-Coding RNAs.
JD125005 - Sequence 106029 from Patent EP1572962.
MA619479 - JP 2018138019-A/191405: Polycomb-Associated Non-Coding RNAs.
MA442169 - JP 2018138019-A/14095: Polycomb-Associated Non-Coding RNAs.
MA591984 - JP 2018138019-A/163910: Polycomb-Associated Non-Coding RNAs.
MA591983 - JP 2018138019-A/163909: Polycomb-Associated Non-Coding RNAs.
MA591982 - JP 2018138019-A/163908: Polycomb-Associated Non-Coding RNAs.
MA591981 - JP 2018138019-A/163907: Polycomb-Associated Non-Coding RNAs.
MA591980 - JP 2018138019-A/163906: Polycomb-Associated Non-Coding RNAs.
MA591979 - JP 2018138019-A/163905: Polycomb-Associated Non-Coding RNAs.
MA591978 - JP 2018138019-A/163904: Polycomb-Associated Non-Coding RNAs.
MA591973 - JP 2018138019-A/163899: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-4202 - arsenic detoxification (mammals)

BioCarta from NCI Cancer Genome Anatomy Project
h_vitCBPathway - Vitamin C in the Brain

Reactome (by CSHL, EBI, and GO)

Protein P11166 (Reactome details) participates in the following event(s):

R-HSA-450088 GLUT1 tetramer binds 4xATP
R-HSA-450092 GLUT1:ATP tetramer dissociates to GLUT1 tetramer and 4xATP
R-HSA-5339524 GLUT1 (SLC2A1) tetramer transports Glc from extracellular region to cytosol
R-HSA-198818 GLUT1/3 transports extracellular DHvitC to cytosol
R-HSA-5653873 SLC2A1 tetramer transports Glc from cytosol to Golgi lumen
R-HSA-499981 Transport of Extracellular Glucose to the Cytosol by GLUT1 and GLUT2
R-HSA-189200 Cellular hexose transport
R-HSA-425407 SLC-mediated transmembrane transport
R-HSA-196836 Vitamin C (ascorbate) metabolism
R-HSA-5653890 Lactose synthesis
R-HSA-422356 Regulation of insulin secretion
R-HSA-382551 Transport of small molecules
R-HSA-196849 Metabolism of water-soluble vitamins and cofactors
R-HSA-71387 Metabolism of carbohydrates
R-HSA-163685 Energy Metabolism
R-HSA-196854 Metabolism of vitamins and cofactors
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K9S6, B2R620, D3DPX0, ENST00000426263.1, ENST00000426263.2, ENST00000426263.3, ENST00000426263.4, ENST00000426263.5, ENST00000426263.6, ENST00000426263.7, ENST00000426263.8, ENST00000426263.9, GLUT1 , GTR1_HUMAN, NM_006516, O75535, P11166, Q0P512, Q147X2, SLC2A1 , uc319vkk.1, uc319vkk.2
UCSC ID: ENST00000426263.10_9
RefSeq Accession: NM_006516.4
Protein: P11166 (aka GTR1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene SLC2A1:
dystonia-ov (Hereditary Dystonia Overview)
glut1 (Glucose Transporter Type 1 Deficiency Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.