Human Gene RSBN1L (ENST00000334955.13_7) from GENCODE V47lift37
  Description: round spermatid basic protein 1 like (from RefSeq NM_198467.3)
Gencode Transcript: ENST00000334955.13_7
Gencode Gene: ENSG00000187257.16_13
Transcript (Including UTRs)
   Position: hg19 chr7:77,325,776-77,412,339 Size: 86,564 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr7:77,325,787-77,408,485 Size: 82,699 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:77,325,776-77,412,339)mRNA (may differ from genome)Protein (846 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RSBNL_HUMAN
DESCRIPTION: RecName: Full=Round spermatid basic protein 1-like protein;
SUBCELLULAR LOCATION: Nucleus (By similarity).
SIMILARITY: Belongs to the round spermatid basic protein 1 family.
SEQUENCE CAUTION: Sequence=AAH46353.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=BAC85872.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.51 RPKM in Testis
Total median expression: 221.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -1211.203854-0.314 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026306 - RSBN1

ModBase Predicted Comparative 3D Structure on Q6PCB5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGD  WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  LF383946 - JP 2014500723-A/191449: Polycomb-Associated Non-Coding RNAs.
BC059402 - Homo sapiens round spermatid basic protein 1-like, mRNA (cDNA clone MGC:71764 IMAGE:30347338), complete cds.
BC046353 - Homo sapiens round spermatid basic protein 1-like, mRNA (cDNA clone IMAGE:5502424), partial cds.
KJ904038 - Synthetic construct Homo sapiens clone ccsbBroadEn_13432 RSBN1L gene, encodes complete protein.
MA619523 - JP 2018138019-A/191449: Polycomb-Associated Non-Coding RNAs.
LF357714 - JP 2014500723-A/165217: Polycomb-Associated Non-Coding RNAs.
JD200364 - Sequence 181388 from Patent EP1572962.
JD407979 - Sequence 389003 from Patent EP1572962.
LF357713 - JP 2014500723-A/165216: Polycomb-Associated Non-Coding RNAs.
MA593291 - JP 2018138019-A/165217: Polycomb-Associated Non-Coding RNAs.
MA593290 - JP 2018138019-A/165216: Polycomb-Associated Non-Coding RNAs.
AK127713 - Homo sapiens cDNA FLJ45813 fis, clone NT2RP7017139.
JD276772 - Sequence 257796 from Patent EP1572962.
JD176780 - Sequence 157804 from Patent EP1572962.
JD435570 - Sequence 416594 from Patent EP1572962.
JD061478 - Sequence 42502 from Patent EP1572962.
AK124517 - Homo sapiens cDNA FLJ42526 fis, clone BRACE3001595.
BC046193 - Homo sapiens, clone IMAGE:6018287, mRNA.
JD451261 - Sequence 432285 from Patent EP1572962.
JD555457 - Sequence 536481 from Patent EP1572962.
JD131926 - Sequence 112950 from Patent EP1572962.
JD278352 - Sequence 259376 from Patent EP1572962.
JD119101 - Sequence 100125 from Patent EP1572962.
JD144619 - Sequence 125643 from Patent EP1572962.
JD283339 - Sequence 264363 from Patent EP1572962.
JD135507 - Sequence 116531 from Patent EP1572962.
JD135506 - Sequence 116530 from Patent EP1572962.
JD497595 - Sequence 478619 from Patent EP1572962.
JD542323 - Sequence 523347 from Patent EP1572962.
JD542324 - Sequence 523348 from Patent EP1572962.
JD542325 - Sequence 523349 from Patent EP1572962.
JD060728 - Sequence 41752 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: C9K0P1, ENST00000334955.1, ENST00000334955.10, ENST00000334955.11, ENST00000334955.12, ENST00000334955.2, ENST00000334955.3, ENST00000334955.4, ENST00000334955.5, ENST00000334955.6, ENST00000334955.7, ENST00000334955.8, ENST00000334955.9, NM_198467, Q6PCB5, Q6ZS58, Q6ZVI9, Q86X48, RSBNL_HUMAN, uc317ucy.1, uc317ucy.2
UCSC ID: ENST00000334955.13_7
RefSeq Accession: NM_198467.3
Protein: Q6PCB5 (aka RSBNL_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.