Human Gene RPSAP47 (ENST00000479228.1_2) from GENCODE V47lift37
  Description: ribosomal protein SA pseudogene 47 (from HGNC RPSAP47)
Gencode Transcript: ENST00000479228.1_2
Gencode Gene: ENSG00000188856.6_3
Transcript (Including UTRs)
   Position: hg19 chr8:81,471,105-81,471,992 Size: 888 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:81,471,105-81,471,992)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerHGNCPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.34 RPKM in Testis
Total median expression: 1.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  JD021217 - Sequence 2241 from Patent EP1572962.
JD024801 - Sequence 5825 from Patent EP1572962.
JD021508 - Sequence 2532 from Patent EP1572962.
JD292109 - Sequence 273133 from Patent EP1572962.
JD268759 - Sequence 249783 from Patent EP1572962.
JD268760 - Sequence 249784 from Patent EP1572962.
JD034630 - Sequence 15654 from Patent EP1572962.
LF325263 - JP 2014500723-A/132766: Polycomb-Associated Non-Coding RNAs.
DQ595111 - Homo sapiens piRNA piR-61223, complete sequence.
JD518340 - Sequence 499364 from Patent EP1572962.
DQ585854 - Homo sapiens piRNA piR-52966, complete sequence.
JD251178 - Sequence 232202 from Patent EP1572962.
JD123924 - Sequence 104948 from Patent EP1572962.
JD283515 - Sequence 264539 from Patent EP1572962.
JD247592 - Sequence 228616 from Patent EP1572962.
MA560840 - JP 2018138019-A/132766: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: JD024801, uc321xxl.1
UCSC ID: ENST00000479228.1_2
RefSeq Accession: NM_000014.6

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.