Human Gene RNF181 (ENST00000306368.9_5) from GENCODE V47lift37
  Description: ring finger protein 181 (from RefSeq NM_016494.4)
Gencode Transcript: ENST00000306368.9_5
Gencode Gene: ENSG00000168894.10_13
Transcript (Including UTRs)
   Position: hg19 chr2:85,822,868-85,824,831 Size: 1,964 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr2:85,822,887-85,824,627 Size: 1,741 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:85,822,868-85,824,831)mRNA (may differ from genome)Protein (153 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RN181_HUMAN
DESCRIPTION: RecName: Full=E3 ubiquitin-protein ligase RNF181; EC=6.3.2.-; AltName: Full=RING finger protein 181;
FUNCTION: E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Directly interacts with ITGA2B and, as a result, with integrin ITGA2B/ITGB3. There is no evidence that integrin ITGA2B/ITGB3 is an endogenous substrate for RNF181-directed ubiquitination.
TISSUE SPECIFICITY: Widely expressed, with highest levels in liver and heart and lowest levels in brain and skeletal muscle. Expressed in platelets (at protein level).
PTM: Auto-ubiquitinated as part of the enzymatic reaction.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Belongs to the RNF181 family.
SIMILARITY: Contains 1 RING-type zinc finger.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 59.99 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 1699.45 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.7019-0.195 Picture PostScript Text
3' UTR -65.60204-0.322 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001841 - Znf_RING
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF00097 - Zinc finger, C3HC4 type (RING finger)
PF12678 - RING-H2 zinc finger domain
PF12861 - Anaphase-promoting complex subunit 11 RING-H2 finger
PF13445 - RING-type zinc-finger
PF13639 - Ring finger domain
PF13923 - Zinc finger, C3HC4 type (RING finger)
PF14634 - zinc-RING finger domain
PF17123 - RING-like zinc finger

SCOP Domains:
57850 - RING/U-box
57889 - Cysteine-rich domain
57903 - FYVE/PHD zinc finger
75712 - Rad50 coiled-coil Zn hook

ModBase Predicted Comparative 3D Structure on Q9P0P0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding
GO:0061630 ubiquitin protein ligase activity

Biological Process:
GO:0000209 protein polyubiquitination
GO:0016567 protein ubiquitination
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051865 protein autoubiquitination

Cellular Component:
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AF151072 - Homo sapiens HSPC238 mRNA, complete cds.
BC002803 - Homo sapiens ring finger protein 181, mRNA (cDNA clone MGC:3402 IMAGE:3636703), complete cds.
AK222700 - Homo sapiens mRNA for hypothetical protein LOC51255 variant, clone: CBR07732.
CU678208 - Synthetic construct Homo sapiens gateway clone IMAGE:100020147 5' read RNF181 mRNA.
HQ447307 - Synthetic construct Homo sapiens clone IMAGE:100070619; CCSB004189_01 ring finger protein 181 (RNF181) gene, encodes complete protein.
KJ893862 - Synthetic construct Homo sapiens clone ccsbBroadEn_03256 RNF181 gene, encodes complete protein.
CR457165 - Homo sapiens full open reading frame cDNA clone RZPDo834H018D for gene LOC51255, hypothetical protein LOC51255; complete cds, incl. stopcodon.
JD456197 - Sequence 437221 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9P0P0 (Reactome details) participates in the following event(s):

R-HSA-8939323 RNF181 binds BCL10 and Ubiquitin:E2
R-HSA-8866654 E3 ubiquitin ligases ubiquitinate target proteins
R-HSA-8852135 Protein ubiquitination
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000306368.1, ENST00000306368.2, ENST00000306368.3, ENST00000306368.4, ENST00000306368.5, ENST00000306368.6, ENST00000306368.7, ENST00000306368.8, HSPC238 , NM_016494, Q53H81, Q9P0P0, RN181_HUMAN, RNF181 , uc317nvg.1, uc317nvg.2
UCSC ID: ENST00000306368.9_5
RefSeq Accession: NM_016494.4
Protein: Q9P0P0 (aka RN181_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.