Human Gene RAMP3 (ENST00000242249.8_6) from GENCODE V47lift37
  Description: receptor activity modifying protein 3 (from RefSeq NM_005856.3)
Gencode Transcript: ENST00000242249.8_6
Gencode Gene: ENSG00000122679.8_9
Transcript (Including UTRs)
   Position: hg19 chr7:45,197,390-45,223,849 Size: 26,460 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr7:45,197,428-45,223,011 Size: 25,584 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:45,197,390-45,223,849)mRNA (may differ from genome)Protein (148 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: RAMP3_HUMAN
DESCRIPTION: RecName: Full=Receptor activity-modifying protein 3; AltName: Full=Calcitonin-receptor-like receptor activity-modifying protein 3; Short=CRLR activity-modifying protein 3; Flags: Precursor;
FUNCTION: Transports the calcitonin gene-related peptide type 1 receptor (CALCRL) to the plasma membrane. Acts as a receptor for adrenomedullin (AM) together with CALCRL.
SUBUNIT: Heterodimer of CALCRL and RAMP3 (By similarity).
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Strongly expressed in lung, breast, immune system and fetal tissues.
SIMILARITY: Belongs to the RAMP family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 81.14 RPKM in Lung
Total median expression: 835.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -15.3038-0.403 Picture PostScript Text
3' UTR -378.20838-0.451 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006985 - RAMP

Pfam Domains:
PF04901 - Receptor activity modifying family

ModBase Predicted Comparative 3D Structure on O60896
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001605 adrenomedullin receptor activity
GO:0005515 protein binding
GO:0008565 protein transporter activity
GO:0015026 coreceptor activity
GO:0097643 amylin receptor activity

Biological Process:
GO:0001921 positive regulation of receptor recycling
GO:0006816 calcium ion transport
GO:0006886 intracellular protein transport
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007189 adenylate cyclase-activating G-protein coupled receptor signaling pathway
GO:0008277 regulation of G-protein coupled receptor protein signaling pathway
GO:0010628 positive regulation of gene expression
GO:0010739 positive regulation of protein kinase A signaling
GO:0010942 positive regulation of cell death
GO:0015031 protein transport
GO:0030816 positive regulation of cAMP metabolic process
GO:0031623 receptor internalization
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0038041 cross-receptor inhibition within G-protein coupled receptor heterodimer
GO:0051897 positive regulation of protein kinase B signaling
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0071392 cellular response to estradiol stimulus
GO:0072659 protein localization to plasma membrane
GO:0086103 G-protein coupled receptor signaling pathway involved in heart process
GO:0097647 amylin receptor signaling pathway
GO:1903078 positive regulation of protein localization to plasma membrane
GO:1905665 positive regulation of calcium ion import across plasma membrane
GO:1990410 adrenomedullin receptor signaling pathway

Cellular Component:
GO:0005622 intracellular
GO:0005764 lysosome
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043235 receptor complex
GO:1903143 adrenomedullin receptor complex
GO:1903440 amylin receptor complex


-  Descriptions from all associated GenBank mRNAs
  AJ001016 - Homo sapiens mRNA encoding RAMP3.
BC022304 - Homo sapiens receptor (G protein-coupled) activity modifying protein 3, mRNA (cDNA clone MGC:22548 IMAGE:4717934), complete cds.
BC053852 - Homo sapiens receptor (G protein-coupled) activity modifying protein 3, mRNA (cDNA clone MGC:61457 IMAGE:6197363), complete cds.
AK222469 - Homo sapiens mRNA for receptor (calcitonin) activity modifying protein 3 precursor variant, clone: adKA02144.
DQ891371 - Synthetic construct clone IMAGE:100004001; FLH176304.01X; RZPDo839B10122D receptor (calcitonin) activity modifying protein 3 (RAMP3) gene, encodes complete protein.
HQ448585 - Synthetic construct Homo sapiens clone IMAGE:100072023; CCSB011921_01 receptor (G protein-coupled) activity modifying protein 3 (RAMP3) gene, encodes complete protein.
KJ892983 - Synthetic construct Homo sapiens clone ccsbBroadEn_02377 RAMP3 gene, encodes complete protein.
CU691036 - Synthetic construct Homo sapiens gateway clone IMAGE:100021539 5' read RAMP3 mRNA.
KJ898187 - Synthetic construct Homo sapiens clone ccsbBroadEn_07581 RAMP3 gene, encodes complete protein.
AK311871 - Homo sapiens cDNA, FLJ92137, Homo sapiens receptor (calcitonin) activity modifying protein 3(RAMP3), mRNA.
AY265459 - Homo sapiens receptor calcitonin activity modifying protein 3 (RAMP3) mRNA, complete cds.
JD026047 - Sequence 7071 from Patent EP1572962.
AK128765 - Homo sapiens cDNA FLJ45216 fis, clone BRCAN2019351, highly similar to Homo sapiens receptor (calcitonin) activity modifying protein 3 (RAMP3).
JD409567 - Sequence 390591 from Patent EP1572962.
JD114758 - Sequence 95782 from Patent EP1572962.
JD164190 - Sequence 145214 from Patent EP1572962.
JD399182 - Sequence 380206 from Patent EP1572962.
JD338421 - Sequence 319445 from Patent EP1572962.
JD198855 - Sequence 179879 from Patent EP1572962.
JD322700 - Sequence 303724 from Patent EP1572962.
JD454707 - Sequence 435731 from Patent EP1572962.
JD325262 - Sequence 306286 from Patent EP1572962.
JD155664 - Sequence 136688 from Patent EP1572962.
JD231349 - Sequence 212373 from Patent EP1572962.
JD427253 - Sequence 408277 from Patent EP1572962.
JD480215 - Sequence 461239 from Patent EP1572962.
JD062714 - Sequence 43738 from Patent EP1572962.
JD544455 - Sequence 525479 from Patent EP1572962.
JD219045 - Sequence 200069 from Patent EP1572962.
JD378341 - Sequence 359365 from Patent EP1572962.
JD538470 - Sequence 519494 from Patent EP1572962.
JD497420 - Sequence 478444 from Patent EP1572962.
JD134688 - Sequence 115712 from Patent EP1572962.
JD079418 - Sequence 60442 from Patent EP1572962.
JD270913 - Sequence 251937 from Patent EP1572962.
JD386380 - Sequence 367404 from Patent EP1572962.
JD439111 - Sequence 420135 from Patent EP1572962.
JD399047 - Sequence 380071 from Patent EP1572962.
JD282813 - Sequence 263837 from Patent EP1572962.
JD497400 - Sequence 478424 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O60896 (Reactome details) participates in the following event(s):

R-HSA-420214 The adrenomedullin receptor can bind adrenomedullin and intermedin
R-HSA-420265 Amylin receptors can bind Amylin
R-HSA-744886 The Ligand:GPCR:Gs complex dissociates
R-HSA-744887 Liganded Gs-activating GPCRs bind inactive heterotrimeric Gs
R-HSA-379044 Liganded Gs-activating GPCR acts as a GEF for Gs
R-HSA-419812 Calcitonin-like ligand receptors
R-HSA-418555 G alpha (s) signalling events
R-HSA-373080 Class B/2 (Secretin family receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000242249.1, ENST00000242249.2, ENST00000242249.3, ENST00000242249.4, ENST00000242249.5, ENST00000242249.6, ENST00000242249.7, NM_005856, O60896, Q7Z2Y1, RAMP3_HUMAN, uc317eju.1, uc317eju.2
UCSC ID: ENST00000242249.8_6
RefSeq Accession: NM_005856.3
Protein: O60896 (aka RAMP3_HUMAN or RMP3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.