Human Gene PTPN20A (ENST00000246887.6) from GENCODE V47lift37
  Description: PTPN20A (from geneSymbol)
Gencode Transcript: ENST00000246887.6
Gencode Gene: ENSG00000204179.6
Transcript (Including UTRs)
   Position: hg19 chr10:46,550,121-46,641,013 Size: 90,893 Total Exon Count: 5 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:46,550,121-46,641,013)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerHGNCPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.46 RPKM in Testis
Total median expression: 2.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC036539 - Homo sapiens cDNA clone IMAGE:5262458, containing frame-shift errors.
BX648913 - Homo sapiens mRNA; cDNA DKFZp686N22268 (from clone DKFZp686N22268).
AL050040 - Homo sapiens mRNA; cDNA DKFZp566K0524 (from clone DKFZp566K0524); partial cds.
CR933668 - Homo sapiens mRNA; cDNA DKFZp781P23155 (from clone DKFZp781P23155).
JD298760 - Sequence 279784 from Patent EP1572962.
JD089913 - Sequence 70937 from Patent EP1572962.
JD358297 - Sequence 339321 from Patent EP1572962.
JD245474 - Sequence 226498 from Patent EP1572962.
JD327651 - Sequence 308675 from Patent EP1572962.
JD284518 - Sequence 265542 from Patent EP1572962.
JD349317 - Sequence 330341 from Patent EP1572962.
JD538672 - Sequence 519696 from Patent EP1572962.
JD053374 - Sequence 34398 from Patent EP1572962.
JD038168 - Sequence 19192 from Patent EP1572962.
JD378804 - Sequence 359828 from Patent EP1572962.
JD284561 - Sequence 265585 from Patent EP1572962.
JD442375 - Sequence 423399 from Patent EP1572962.
JD204920 - Sequence 185944 from Patent EP1572962.
JD183907 - Sequence 164931 from Patent EP1572962.
JD239418 - Sequence 220442 from Patent EP1572962.
BC113473 - Homo sapiens protein tyrosine phosphatase, non-receptor type 20A, mRNA (cDNA clone MGC:142033 IMAGE:8322525), complete cds.
BC143394 - Homo sapiens protein tyrosine phosphatase, non-receptor type 20B, mRNA (cDNA clone IMAGE:9051900), complete cds.
BC093750 - Homo sapiens protein tyrosine phosphatase, non-receptor type 20A, mRNA (cDNA clone MGC:120785 IMAGE:7939595), complete cds.
AY704146 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 6 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704149 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 9 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704151 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 11 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704155 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 15 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704141 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 1 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704142 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 2 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704143 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 3 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704144 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 4 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704145 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 5 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704147 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 7 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704148 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 8 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704150 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 10 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704152 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 12 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704153 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 13 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704154 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 14 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704156 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 16 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704157 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 17 (PTPN20) mRNA, complete cds, alternatively spliced.
AY704158 - Homo sapiens non-receptor protein tyrosine phosphatase 20 variant 18 (PTPN20) mRNA, complete cds, alternatively spliced.
BC171725 - Homo sapiens protein tyrosine phosphatase, non-receptor type 20B, mRNA (cDNA clone IMAGE:9051901), complete cds.
BC141460 - Synthetic construct Homo sapiens clone IMAGE:100014753, MGC:175367 protein tyrosine phosphatase, non-receptor type 20B (PTPN20B) mRNA, encodes complete protein.
AB464105 - Synthetic construct DNA, clone: pF1KB7374, Homo sapiens PTPN20B gene for protein tyrosine phosphatase, non-receptor type 20B, without stop codon, in Flexi system.
AY753191 - Homo sapiens non-receptor protein tyrosine phosphatase 20 isoform a (PTPN20) mRNA, partial cds.
JD541853 - Sequence 522877 from Patent EP1572962.
JD159558 - Sequence 140582 from Patent EP1572962.
JD060549 - Sequence 41573 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CR933668, ENST00000246887.1, ENST00000246887.2, ENST00000246887.3, ENST00000246887.4, ENST00000246887.5, uc317eul.1
UCSC ID: ENST00000246887.6
RefSeq Accession: NM_000014.6

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.