Human Gene PTGES2 (ENST00000338961.11_8) from GENCODE V47lift37
  Description: prostaglandin E synthase 2, transcript variant 1 (from RefSeq NM_025072.7)
Gencode Transcript: ENST00000338961.11_8
Gencode Gene: ENSG00000148334.16_17
Transcript (Including UTRs)
   Position: hg19 chr9:130,882,972-130,890,008 Size: 7,037 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr9:130,883,424-130,889,996 Size: 6,573 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:130,882,972-130,890,008)mRNA (may differ from genome)Protein (377 aa)
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HGNCMalacardsMGIOMIMPubMedReactome
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-  Comments and Description Text from UniProtKB
  ID: PGES2_HUMAN
DESCRIPTION: RecName: Full=Prostaglandin E synthase 2; EC=5.3.99.3; AltName: Full=Microsomal prostaglandin E synthase 2; Short=mPGES-2; Contains: RecName: Full=Prostaglandin E synthase 2 truncated form;
FUNCTION: Isomerase that catalyzes the conversion of unstable intermediate of prostaglandin E2 H2 (PGH2) into the more stable prostaglandin E2 (PGE2) form. May also have transactivation activity toward IFN-gamma (IFNG), possibly via an interaction with CEBPB; however, the relevance of transcription activation activity remains unclear.
CATALYTIC ACTIVITY: (5Z,13E)-(15S)-9-alpha,11-alpha-epidioxy-15- hydroxyprosta-5,13-dienoate = (5Z,13E)-(15S)-11-alpha,15- dihydroxy-9-oxoprosta-5,13-dienoate.
COFACTOR: Dihydrolipoic acid.
PATHWAY: Lipid metabolism; prostaglandin biosynthesis.
SUBUNIT: Homodimer. May interact with CEBPB (By similarity). Interacts with EXOSC10.
SUBCELLULAR LOCATION: Golgi apparatus membrane; Single-pass membrane protein.
SUBCELLULAR LOCATION: Prostaglandin E synthase 2 truncated form: Cytoplasm, perinuclear region. Note=Synthetized as a Golgi membrane-bound protein, which is further cleaved into the predominant soluble truncated form. The truncated form is cytoplasmic and is enriched in the perinuclear region.
TISSUE SPECIFICITY: Widely expressed. Expressed in the heart, including apex, inter-ventricular septum, both atria and ventricles, but not in the aorta. Also expressed in fetal heart. Detected in various regions of the brain: cerebellum; occipital, frontal and parietal lobes. Also expressed in the lymph nodes, skeletal muscle, kidney and trachea, but not in the thymus or lung. Overexpressed in colorectal cancer.
SIMILARITY: Belongs to the GST superfamily.
SIMILARITY: Contains 1 glutaredoxin domain.
SIMILARITY: Contains 1 GST C-terminal domain.
SEQUENCE CAUTION: Sequence=CAI13822.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PTGES2
Diseases sorted by gene-association score: bladder papillary transitional cell neoplasm (7), urinary tract papillary transitional cell benign neoplasm (7), colorectal cancer (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 59.06 RPKM in Pituitary
Total median expression: 1700.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -189.30452-0.419 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002109 - Glutaredoxin
IPR010987 - Glutathione-S-Trfase_C-like
IPR017933 - Glutathione_S_Trfase/Cl_chnl_C
IPR004046 - GST_C
IPR012336 - Thioredoxin-like_fold

Pfam Domains:
PF00462 - Glutaredoxin
PF13409 - Glutathione S-transferase, N-terminal domain
PF13417 - Glutathione S-transferase, N-terminal domain

SCOP Domains:
47616 - GST C-terminal domain-like
52833 - Thioredoxin-like

ModBase Predicted Comparative 3D Structure on Q9H7Z7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0009055 electron carrier activity
GO:0015035 protein disulfide oxidoreductase activity
GO:0016829 lyase activity
GO:0016853 isomerase activity
GO:0020037 heme binding
GO:0043295 glutathione binding
GO:0050220 prostaglandin-E synthase activity

Biological Process:
GO:0001516 prostaglandin biosynthetic process
GO:0006629 lipid metabolic process
GO:0006631 fatty acid metabolic process
GO:0006633 fatty acid biosynthetic process
GO:0006693 prostaglandin metabolic process
GO:0019371 cyclooxygenase pathway
GO:0022900 electron transport chain
GO:0043312 neutrophil degranulation
GO:0045454 cell redox homeostasis
GO:0045893 positive regulation of transcription, DNA-templated
GO:0046903 secretion
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0000139 Golgi membrane
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0035578 azurophil granule lumen
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC009397 - Homo sapiens prostaglandin E synthase 2, mRNA (cDNA clone IMAGE:4134979), partial cds.
BC009456 - Homo sapiens, clone IMAGE:3536456, mRNA, partial cds.
BC011613 - Homo sapiens prostaglandin E synthase 2, mRNA (cDNA clone MGC:11289 IMAGE:3946495), complete cds.
AK024100 - Homo sapiens cDNA FLJ14038 fis, clone HEMBA1005206.
AK057049 - Homo sapiens cDNA FLJ32487 fis, clone SKNSH1000002, highly similar to Prostaglandin E synthase 2 (EC 5.3.99.3).
AK301618 - Homo sapiens cDNA FLJ51353 complete cds, highly similar to Prostaglandin E synthase 2 (EC 5.3.99.3).
JD137723 - Sequence 118747 from Patent EP1572962.
JD098608 - Sequence 79632 from Patent EP1572962.
JD104723 - Sequence 85747 from Patent EP1572962.
JD124403 - Sequence 105427 from Patent EP1572962.
AK223520 - Homo sapiens mRNA for prostaglandin E synthase 2 isoform 1 variant, clone: FCC123C01.
JD200162 - Sequence 181186 from Patent EP1572962.
JD186285 - Sequence 167309 from Patent EP1572962.
KJ905547 - Synthetic construct Homo sapiens clone ccsbBroadEn_15163 PTGES2 gene, encodes complete protein.
DQ891904 - Synthetic construct clone IMAGE:100004534; FLH181280.01X; RZPDo839B09136D prostaglandin E synthase 2 (PTGES2) gene, encodes complete protein.
DQ895090 - Synthetic construct Homo sapiens clone IMAGE:100009550; FLH181276.01L; RZPDo839B09135D prostaglandin E synthase 2 (PTGES2) gene, encodes complete protein.
AB463194 - Synthetic construct DNA, clone: pF1KB8681, Homo sapiens PTGES2 gene for prostaglandin E synthase 2, without stop codon, in Flexi system.
AM392565 - Synthetic construct Homo sapiens clone IMAGE:100002080 for hypothetical protein (PTGES2 gene).
JD021899 - Sequence 2923 from Patent EP1572962.
JD030068 - Sequence 11092 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY66-374 - C20 prostanoid biosynthesis

Reactome (by CSHL, EBI, and GO)

Protein Q9H7Z7 (Reactome details) participates in the following event(s):

R-HSA-6798751 Exocytosis of azurophil granule lumen proteins
R-HSA-265295 Prostaglandin E synthase isomerizes PGH2 to PGE2
R-HSA-6798695 Neutrophil degranulation
R-HSA-2162123 Synthesis of Prostaglandins (PG) and Thromboxanes (TX)
R-HSA-168249 Innate Immune System
R-HSA-2142753 Arachidonic acid metabolism
R-HSA-168256 Immune System
R-HSA-8978868 Fatty acid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: C9orf15, ENST00000338961.1, ENST00000338961.10, ENST00000338961.2, ENST00000338961.3, ENST00000338961.4, ENST00000338961.5, ENST00000338961.6, ENST00000338961.7, ENST00000338961.8, ENST00000338961.9, NM_025072, PGES2, PGES2_HUMAN, Q53EW9, Q5SYV6, Q96GI0, Q96GL2, Q9H7Z7, uc317vet.1, uc317vet.2
UCSC ID: ENST00000338961.11_8
RefSeq Accession: NM_025072.7
Protein: Q9H7Z7 (aka PGES2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.