Human Gene PRR5 (ENST00000336985.11_11) from GENCODE V47lift37
  Description: proline rich 5, transcript variant 1 (from RefSeq NM_181333.4)
Gencode Transcript: ENST00000336985.11_11
Gencode Gene: ENSG00000186654.22_16
Transcript (Including UTRs)
   Position: hg19 chr22:45,098,084-45,133,561 Size: 35,478 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr22:45,098,355-45,133,127 Size: 34,773 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:45,098,084-45,133,561)mRNA (may differ from genome)Protein (388 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PRR5_HUMAN
DESCRIPTION: RecName: Full=Proline-rich protein 5; AltName: Full=Protein observed with Rictor-1; Short=Protor-1;
FUNCTION: Subunit of mTORC2, which regulates cell growth and survival in response to hormonal signals. mTORC2 is activated by growth factors, but, in contrast to mTORC1, seems to be nutrient- insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'. PRR5 plays an important role in regulation of PDGFRB expression and in modulation of platelet-derived growth factor signaling. May act as a tumor suppressor in breast cancer.
SUBUNIT: Part of the mammalian target of rapamycin complex 2 (mTORC2) which contains MTOR, MLST8, PRR5, RICTOR, MAPKAP1 and DEPTOR. Contrary to mTORC1, mTORC2 does not bind to and is not sensitive to FKBP12-rapamycin. Binds directly to MTOR and RICTOR within the TORC2 complex.
TISSUE SPECIFICITY: Most abundant in kidney and liver. Also highly expressed in brain, spleen, testis and placenta. Overexpressed in several colorectal tumors.
SIMILARITY: Belongs to the PROTOR family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D001564 Benzo(a)pyrene
  • D003300 Copper
  • C558013 NSC 689534
  • C006780 bisphenol A
  • C008261 lead acetate

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.41 RPKM in Spleen
Total median expression: 305.11 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -166.50271-0.614 Picture PostScript Text
3' UTR -162.70434-0.375 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013745 - HbrB

Pfam Domains:
PF08539 - HbrB-like

SCOP Domains:
74788 - Cullin repeat-like

ModBase Predicted Comparative 3D Structure on P85299
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0001934 positive regulation of protein phosphorylation
GO:0007049 cell cycle
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling
GO:0032148 activation of protein kinase B activity
GO:0038203 TORC2 signaling

Cellular Component:
GO:0005829 cytosol
GO:0031932 TORC2 complex


-  Descriptions from all associated GenBank mRNAs
  AK091884 - Homo sapiens cDNA FLJ34565 fis, clone KIDNE2006210, highly similar to Homo sapiens proline rich protein 5 (PRR5), transcript variant 1, mRNA.
AK055848 - Homo sapiens cDNA FLJ31286 fis, clone KIDNE2007077, highly similar to Homo sapiens proline rich protein 5 (PRR5), transcript variant 1, mRNA.
AL355192 - Novel human gene mapping to chomosome 22.
AF195968 - Homo sapiens rho GTPase activating protein 8 isoform 1 (ARHGAP8) mRNA, complete cds.
BC132755 - Homo sapiens PRR5-ARHGAP8 fusion, mRNA (cDNA clone MGC:164386 IMAGE:40146777), complete cds.
BC132757 - Homo sapiens PRR5-ARHGAP8 fusion, mRNA (cDNA clone MGC:164388 IMAGE:40146779), complete cds.
BC144382 - Homo sapiens PRR5-ARHGAP8 fusion, mRNA (cDNA clone MGC:177920 IMAGE:9052903), complete cds.
HQ258425 - Synthetic construct Homo sapiens clone IMAGE:100072854 PRR5-ARHGAP8 readthrough (PRR5-ARHGAP8) (PRR5-ARHGAP8) gene, encodes complete protein.
KJ904318 - Synthetic construct Homo sapiens clone ccsbBroadEn_13712 PRR5-ARHGAP8 gene, encodes complete protein.
AK291564 - Homo sapiens cDNA FLJ77560 complete cds, highly similar to Homo sapiens proline rich protein 5 (PRR5), transcript variant 1, mRNA.
AF177331 - Homo sapiens clone PP610 unknown mRNA.
JD462849 - Sequence 443873 from Patent EP1572962.
JD470656 - Sequence 451680 from Patent EP1572962.
AF195969 - Homo sapiens rho GTPase activating protein 8 isoform 2 (AHRGAP8) mRNA, complete cds.
BC016921 - Homo sapiens proline rich 5 (renal), mRNA (cDNA clone MGC:21157 IMAGE:4413787), complete cds.
AK000192 - Homo sapiens cDNA FLJ20185 fis, clone COLF0307.
CU677767 - Synthetic construct Homo sapiens gateway clone IMAGE:100022625 5' read PRR5 mRNA.
KJ902841 - Synthetic construct Homo sapiens clone ccsbBroadEn_12235 PRR5 gene, encodes complete protein.
AK056787 - Homo sapiens cDNA FLJ32225 fis, clone PLACE6004368.
JD232619 - Sequence 213643 from Patent EP1572962.
JD559268 - Sequence 540292 from Patent EP1572962.
JD457662 - Sequence 438686 from Patent EP1572962.
JD484749 - Sequence 465773 from Patent EP1572962.
JD398868 - Sequence 379892 from Patent EP1572962.
JD279914 - Sequence 260938 from Patent EP1572962.
JD149142 - Sequence 130166 from Patent EP1572962.
JD136601 - Sequence 117625 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P85299 (Reactome details) participates in the following event(s):

R-HSA-198640 TORC2 (mTOR) phosphorylates AKT at S473
R-HSA-2243938 AKT1 E17K mutant is phosphorylated by TORC2 complex
R-HSA-6795290 TORC2 complex phosphorylates SGK1
R-HSA-389357 CD28 dependent PI3K/Akt signaling
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-5218920 VEGFR2 mediated vascular permeability
R-HSA-5674400 Constitutive Signaling by AKT1 E17K in Cancer
R-HSA-6804757 Regulation of TP53 Degradation
R-HSA-389356 CD28 co-stimulation
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-2219528 PI3K/AKT Signaling in Cancer
R-HSA-6806003 Regulation of TP53 Expression and Degradation
R-HSA-388841 Costimulation by the CD28 family
R-HSA-162582 Signal Transduction
R-HSA-194138 Signaling by VEGF
R-HSA-5663202 Diseases of signal transduction
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-1280218 Adaptive Immune System
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-1643685 Disease
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-168256 Immune System
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B1AHF6, B1AHG5, B3KP73, ENST00000336985.1, ENST00000336985.10, ENST00000336985.2, ENST00000336985.3, ENST00000336985.4, ENST00000336985.5, ENST00000336985.6, ENST00000336985.7, ENST00000336985.8, ENST00000336985.9, NM_181333, O75983, O95695, P85299, PP610, PROTOR1, PRR5_HUMAN, Q5BIW2, Q5EAJ8, Q5EAJ9, Q5XKJ6, Q96RW1, Q96RW2, Q9HA49, Q9HC46, Q9NSG0, Q9NVX8, Q9NXL1, Q9UH20, uc317urb.1, uc317urb.2
UCSC ID: ENST00000336985.11_11
RefSeq Accession: NM_181333.4
Protein: P85299 (aka PRR5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.