Human Gene POU2F3 (ENST00000543440.7_9) from GENCODE V47lift37
  Description: POU class 2 homeobox 3, transcript variant 1 (from RefSeq NM_014352.4)
Gencode Transcript: ENST00000543440.7_9
Gencode Gene: ENSG00000137709.10_12
Transcript (Including UTRs)
   Position: hg19 chr11:120,110,849-120,190,654 Size: 79,806 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg19 chr11:120,111,053-120,189,101 Size: 78,049 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:120,110,849-120,190,654)mRNA (may differ from genome)Protein (436 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PO2F3_HUMAN
DESCRIPTION: RecName: Full=POU domain, class 2, transcription factor 3; AltName: Full=Octamer-binding protein 11; Short=Oct-11; AltName: Full=Octamer-binding transcription factor 11; Short=OTF-11; AltName: Full=Transcription factor PLA-1; AltName: Full=Transcription factor Skn-1;
FUNCTION: Transcription factor that binds to the octamer motif (5'-ATTTGCAT-3'). Regulated the expression of a number of genes such as SPRR2A or placental lactogen.
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Specifically expressed in epidermis and cultured keratinocytes.
SIMILARITY: Belongs to the POU transcription factor family. Class- 2 subfamily.
SIMILARITY: Contains 1 homeobox DNA-binding domain.
SIMILARITY: Contains 1 POU-specific domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: POU2F3
Diseases sorted by gene-association score: hemorrhagic disease (2), blood coagulation disease (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 43.54 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 93.35 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -116.80204-0.573 Picture PostScript Text
3' UTR -449.301553-0.289 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017970 - Homeobox_CS
IPR001356 - Homeodomain
IPR009057 - Homeodomain-like
IPR010982 - Lambda_DNA-bd_dom
IPR013847 - POU
IPR000327 - POU_specific
IPR000972 - TF_octamer

Pfam Domains:
PF00046 - Homeodomain
PF00157 - Pou domain - N-terminal to homeobox domain

SCOP Domains:
47413 - lambda repressor-like DNA-binding domains
46689 - Homeodomain-like

ModBase Predicted Comparative 3D Structure on Q9UKI9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0008544 epidermis development
GO:0043922 negative regulation by host of viral transcription
GO:0045944 positive regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  AK302212 - Homo sapiens cDNA FLJ61459 complete cds, highly similar to POU domain, class 2, transcription factor 3.
AK291993 - Homo sapiens cDNA FLJ77352 complete cds, highly similar to POU domain, class 2, transcription factor 3.
AF162278 - Homo sapiens Skn-1a/Epoc-1/Oct-11 POU transcription factor mRNA, complete cds.
BC143593 - Homo sapiens cDNA clone IMAGE:9052105.
BC101649 - Homo sapiens POU class 2 homeobox 3, mRNA (cDNA clone MGC:126698 IMAGE:8069155), complete cds.
BC143594 - Homo sapiens cDNA clone IMAGE:9052106.
BC143595 - Homo sapiens cDNA clone IMAGE:9052107.
AF133895 - Homo sapiens POU domain transcription factor OCT11a (OCT11) mRNA, complete cds.
EU446698 - Synthetic construct Homo sapiens clone IMAGE:100070023; IMAGE:100011907; FLH257187.01L POU class 2 homeobox 3 (POU2F3) gene, encodes complete protein.
AJ012214 - Homo sapiens mRNA for PLA-1 protein.
AF162715 - Homo sapiens Skn-1a/i-like mRNA.
AK097382 - Homo sapiens cDNA FLJ40063 fis, clone TESOP2000205, highly similar to OCTAMER-BINDING TRANSCRIPTION FACTOR 11.
JD085287 - Sequence 66311 from Patent EP1572962.
JD309327 - Sequence 290351 from Patent EP1572962.
JD267257 - Sequence 248281 from Patent EP1572962.
JD312912 - Sequence 293936 from Patent EP1572962.
JD231488 - Sequence 212512 from Patent EP1572962.
JD222066 - Sequence 203090 from Patent EP1572962.
JD166545 - Sequence 147569 from Patent EP1572962.
JD325243 - Sequence 306267 from Patent EP1572962.
JD328779 - Sequence 309803 from Patent EP1572962.
JD494549 - Sequence 475573 from Patent EP1572962.
JD261899 - Sequence 242923 from Patent EP1572962.
JD431806 - Sequence 412830 from Patent EP1572962.
JD559222 - Sequence 540246 from Patent EP1572962.
JD087144 - Sequence 68168 from Patent EP1572962.
JD165304 - Sequence 146328 from Patent EP1572962.
JD213402 - Sequence 194426 from Patent EP1572962.
JD379141 - Sequence 360165 from Patent EP1572962.
JD305775 - Sequence 286799 from Patent EP1572962.
JD435453 - Sequence 416477 from Patent EP1572962.
JD254736 - Sequence 235760 from Patent EP1572962.
JD254737 - Sequence 235761 from Patent EP1572962.
JD514351 - Sequence 495375 from Patent EP1572962.
JD336959 - Sequence 317983 from Patent EP1572962.
JD477501 - Sequence 458525 from Patent EP1572962.
JD547840 - Sequence 528864 from Patent EP1572962.
JD558630 - Sequence 539654 from Patent EP1572962.
JD531811 - Sequence 512835 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K7H8, B4DY07, ENST00000543440.1, ENST00000543440.2, ENST00000543440.3, ENST00000543440.4, ENST00000543440.5, ENST00000543440.6, F5GWW6, NM_014352, OTF11, PLA1, PO2F3_HUMAN, POU2F3 , Q3MIY3, Q9UKI9, Q9UKR7, Q9Y504, uc324urt.1, uc324urt.2
UCSC ID: ENST00000543440.7_9
RefSeq Accession: NM_014352.4
Protein: Q9UKI9 (aka PO2F3_HUMAN or PO23_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.