Human Gene POLG (ENST00000268124.11_8) from GENCODE V47lift37
  Description: DNA polymerase gamma, catalytic subunit, transcript variant 1 (from RefSeq NM_002693.3)
Gencode Transcript: ENST00000268124.11_8
Gencode Gene: ENSG00000140521.18_22
Transcript (Including UTRs)
   Position: hg19 chr15:89,859,551-89,878,055 Size: 18,505 Total Exon Count: 23 Strand: -
Coding Region
   Position: hg19 chr15:89,859,982-89,876,985 Size: 17,004 Coding Exon Count: 22 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:89,859,551-89,878,055)mRNA (may differ from genome)Protein (1239 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DPOG1_HUMAN
DESCRIPTION: RecName: Full=DNA polymerase subunit gamma-1; EC=2.7.7.7; AltName: Full=Mitochondrial DNA polymerase catalytic subunit; AltName: Full=PolG-alpha;
FUNCTION: Involved in the replication of mitochondrial DNA. Associates with mitochondrial DNA.
CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).
COFACTOR: Magnesium.
SUBUNIT: Heterotrimer composed of a catalytic subunit and an homodimer of accessory subunits.
INTERACTION: Q9UHN1:POLG2; NbExp=8; IntAct=EBI-852624, EBI-852642;
SUBCELLULAR LOCATION: Mitochondrion. Mitochondrion matrix, mitochondrion nucleoid.
POLYMORPHISM: The poly-Gln region seems to be polymorphic.
DISEASE: Defects in POLG are the cause of progressive external ophthalmoplegia with mitochondrial DNA deletions autosomal dominant type 1 (PEOA1) [MIM:157640]. Progressive external ophthalmoplegia is characterized by progressive weakness of ocular muscles and levator muscle of the upper eyelid. In a minority of cases, it is associated with skeletal myopathy, which predominantly involves axial or proximal muscles and which causes abnormal fatigability and even permanent muscle weakness. Ragged- red fibers and atrophy are found on muscle biopsy. A large proportion of chronic ophthalmoplegias are associated with other symptoms, leading to a multisystemic pattern of this disease. Additional symptoms are variable, and may include cataracts, hearing loss, sensory axonal neuropathy, ataxia, depression, hypogonadism, and parkinsonism.
DISEASE: Defects in POLG are a cause of progressive external ophthalmoplegia with mitochondrial DNA deletions autosomal recessive (PEOB) [MIM:258450]. PEOB is a severe form of progressive external ophthalmoplegia. It is clinically more heterogeneous than the autosomal dominant forms. Can be more severe.
DISEASE: Defects in POLG are a cause of sensory ataxic neuropathy dysarthria and ophthalmoparesis (SANDO) [MIM:607459]. SANDO is a systemic disorder resulting from mitochondrial dysfunction associated with mitochondrial depletion in skeletal muscle and peripheral nerve tissue. The clinical triad of symptoms consists of sensory ataxic neuropathy, dysarthria, and ophthalmoparesis. However, the phenotype varies widely, even within the same family, and can also include myopathy, seizures, and hearing loss. An atypical form of the disease is characterized by headaches and/or seizures manifesting in childhood or adolescence, followed by development of cerebellar and sensory ataxia, dysarthria, progressive external ophthalmoplegia, and myoclonus in early adulthood.
DISEASE: Defects in POLG are the cause of mitochondrial DNA depletion syndrome type 4A (MTDPS4A) [MIM:203700]; also called Alpers diffuse degeneration of cerebral gray matter with hepatic cirrhosis. An autosomal recessive hepatocerebral syndrome. The typical course of the disease includes severe developmental delay, intractable seizures, liver failure, and death in childhood. Refractory seizures, cortical blindness, progressive liver dysfunction, and acute liver failure after exposure to valproic acid are considered diagnostic features. The neuropathological hallmarks are neuronal loss, spongiform degeneration, and astrocytosis of the visual cortex. Liver biopsy results show steatosis, often progressing to cirrhosis.
DISEASE: Defects in POLG are the cause of mitochondrial DNA depletion syndrome type 4B (MTDPS4B) [MIM:613662]; also known as mitochondrial DNA depletion syndrome 4B MNGIE type or mitochondrial neurogastrointestinal encephalopathy syndrome POLG- related. An autosomal recessive progressive multisystem disorder clinically characterized by chronic gastrointestinal dysmotility and pseudo-obstruction, cachexia, progressive external ophthalmoplegia, axonal sensory ataxic neuropathy, and muscle weakness.
DISEASE: Defects in POLG are a cause of Leigh syndrome (LS) [MIM:256000]. LS is a severe neurological disorder characterized by bilaterally symmetrical necrotic lesions in subcortical brain regions.
SIMILARITY: Belongs to the DNA polymerase type-A family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/POLG";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/polg/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: POLG
Diseases sorted by gene-association score: mitochondrial dna depletion syndrome 4a* (1703), progressive external ophthalmoplegia, autosomal recessive 1* (1650), mitochondrial recessive ataxia syndrome* (1550), mitochondrial dna depletion syndrome 4b* (1231), progressive external ophthalmoplegia, autosomal dominant 1* (1200), myoclonic epilepsy myopathy sensory ataxia* (500), autosomal dominant progressive external ophthalmoplegia* (469), obesity susceptibility, adrb2-related* (400), obesity susceptibility, adrb3-related* (400), obesity susceptibility, enpp1-related* (400), obesity susceptibility, ghrl-related* (400), obesity susceptibility, ucp1-related* (400), mitochondrial neurogastrointestinal encephalomyopathy* (261), mitochondrial metabolism disease* (234), idiopathic generalized epilepsy* (200), mitochondrial disorders* (146), polg-related disorders* (118), mitochondrial dna depletion syndrome, mngie form* (100), childhood myocerebrohepatopathy spectrum disorders* (100), polg-related ataxia neuropathy spectrum disorders* (100), polg-related mitochondrial dna depletion syndrome, mngie form* (100), obesity* (92), leigh syndrome* (54), status epilepticus (29), chronic progressive external ophthalmoplegia (22), acute liver failure (19), hypertrophic olivary degeneration (18), moved to {607459}* (18), ataxia neuropathy spectrum (18), neuropathy (17), epilepsy (15), mitochondrial neurogastrointestinal encephalopathy disease (14), cortical blindness (14), premature menopause (12), coenzyme q10 deficiency disease (11), febrile infection-related epilepsy syndrome (10), exanthema subitum (8), lactic acidosis (8), ocular motility disease (7), diabetic polyneuropathy (6), axonal neuropathy (6), kearns-sayre syndrome (6), cerebral degeneration (6), 3-methylglutaconic aciduria, type iv (5), 3-methylglutaconic aciduria, type v (5), male infertility (4), myopathy (4), bipolar disorder (4), uv-sensitive syndrome (4), mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes (3), cerebellar ataxia (2), cranial nerve disease (1), peripheral nervous system disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.95 RPKM in Spleen
Total median expression: 661.70 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -132.20311-0.425 Picture PostScript Text
3' UTR -139.40431-0.323 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019760 - DNA-dir_DNA_pol_A_CS
IPR002297 - DNA-dir_DNA_pol_A_mt
IPR016265 - DNA-dir_DNA_pol_A_mt_sub
IPR001098 - DNA-dir_DNA_pol_A_palm_dom
IPR012337 - RNaseH-like_dom

Pfam Domains:
PF00476 - DNA polymerase family A
PF18136 - DNA mitochondrial polymerase exonuclease domain

SCOP Domains:
53098 - Ribonuclease H-like
53448 - Nucleotide-diphospho-sugar transferases
56672 - DNA/RNA polymerases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3IKM - X-ray


ModBase Predicted Comparative 3D Structure on P54098
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0002020 protease binding
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0005515 protein binding
GO:0008408 3'-5' exonuclease activity
GO:0016740 transferase activity
GO:0016779 nucleotidyltransferase activity

Biological Process:
GO:0006259 DNA metabolic process
GO:0006260 DNA replication
GO:0006261 DNA-dependent DNA replication
GO:0006264 mitochondrial DNA replication
GO:0006287 base-excision repair, gap-filling
GO:0007568 aging
GO:0009416 response to light stimulus
GO:0010332 response to gamma radiation
GO:0055093 response to hyperoxia
GO:0071333 cellular response to glucose stimulus
GO:0071897 DNA biosynthetic process
GO:0090305 nucleic acid phosphodiester bond hydrolysis

Cellular Component:
GO:0005739 mitochondrion
GO:0005760 gamma DNA polymerase complex
GO:0032991 macromolecular complex
GO:0042645 mitochondrial nucleoid
GO:0043195 terminal bouton


-  Descriptions from all associated GenBank mRNAs
  AK130624 - Homo sapiens cDNA FLJ27114 fis, clone SPL05987, highly similar to DNA polymerase gamma (EC 2.7.7.7).
D84103 - Homo sapiens mRNA for mitochondrial DNA polymerase gamma, complete cds.
X98093 - H.sapiens mRNA for DNA polymerase gamma, mitochondrial protein.
JD463999 - Sequence 445023 from Patent EP1572962.
U60325 - Human DNA polymerase gamma mRNA, nuclear gene encoding mitochondrial protein, complete cds.
BC050559 - Homo sapiens polymerase (DNA directed), gamma, mRNA (cDNA clone MGC:57709 IMAGE:6042595), complete cds.
BC042571 - Homo sapiens polymerase (DNA directed), gamma, mRNA (cDNA clone MGC:21267 IMAGE:4384475), complete cds.
JD561100 - Sequence 542124 from Patent EP1572962.
JD556707 - Sequence 537731 from Patent EP1572962.
JD298823 - Sequence 279847 from Patent EP1572962.
DQ599934 - Homo sapiens piRNA piR-38000, complete sequence.
DQ584129 - Homo sapiens piRNA piR-51241, complete sequence.
DQ584128 - Homo sapiens piRNA piR-51240, complete sequence.
JD247962 - Sequence 228986 from Patent EP1572962.
JD225117 - Sequence 206141 from Patent EP1572962.
JD209385 - Sequence 190409 from Patent EP1572962.
JD184667 - Sequence 165691 from Patent EP1572962.
AK291281 - Homo sapiens cDNA FLJ78646 complete cds, highly similar to Homo sapiens polymerase (DNA directed), gamma (POLG), mRNA.
JD251829 - Sequence 232853 from Patent EP1572962.
JD220668 - Sequence 201692 from Patent EP1572962.
JD358919 - Sequence 339943 from Patent EP1572962.
JD422853 - Sequence 403877 from Patent EP1572962.
JD436816 - Sequence 417840 from Patent EP1572962.
JD307364 - Sequence 288388 from Patent EP1572962.
JD037153 - Sequence 18177 from Patent EP1572962.
JD036446 - Sequence 17470 from Patent EP1572962.
DQ578997 - Homo sapiens piRNA piR-47109, complete sequence.
DQ579893 - Homo sapiens piRNA piR-48005, complete sequence.
AL110092 - Homo sapiens EST from clone 32577, 5' end.
DQ593294 - Homo sapiens piRNA piR-33406, complete sequence.
JD026230 - Sequence 7254 from Patent EP1572962.
LF212119 - JP 2014500723-A/19622: Polycomb-Associated Non-Coding RNAs.
JD155655 - Sequence 136679 from Patent EP1572962.
JD441139 - Sequence 422163 from Patent EP1572962.
JD330757 - Sequence 311781 from Patent EP1572962.
JD247508 - Sequence 228532 from Patent EP1572962.
JD296981 - Sequence 278005 from Patent EP1572962.
JD044766 - Sequence 25790 from Patent EP1572962.
JD396868 - Sequence 377892 from Patent EP1572962.
MA447696 - JP 2018138019-A/19622: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: DPOG1_HUMAN, ENST00000268124.1, ENST00000268124.10, ENST00000268124.2, ENST00000268124.3, ENST00000268124.4, ENST00000268124.5, ENST00000268124.6, ENST00000268124.7, ENST00000268124.8, ENST00000268124.9, MDP1, NM_002693, P54098, POLG1, POLGA, Q8NFM2, Q92515, uc317imt.1, uc317imt.2
UCSC ID: ENST00000268124.11_8
RefSeq Accession: NM_002693.3
Protein: P54098 (aka DPOG1_HUMAN or DPG1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene POLG:
alpers (POLG-Related Disorders)
dystonia-ov (Hereditary Dystonia Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.