Human Gene PARP9 (ENST00000682323.1_4) from GENCODE V47lift37
  Description: poly(ADP-ribose) polymerase family member 9, transcript variant 31 (from RefSeq NR_170864.1)
Gencode Transcript: ENST00000682323.1_4
Gencode Gene: ENSG00000138496.17_13
Transcript (Including UTRs)
   Position: hg19 chr3:122,246,771-122,283,147 Size: 36,377 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr3:122,247,211-122,278,467 Size: 31,257 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:122,246,771-122,283,147)mRNA (may differ from genome)Protein (819 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsHGNC
MalacardsMGIPubMedReactomeUniProtKB

-  Comments and Description Text from UniProtKB
  ID: PARP9_HUMAN
DESCRIPTION: RecName: Full=Poly [ADP-ribose] polymerase 9; Short=PARP-9; EC=2.4.2.30; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 9; Short=ARTD9; AltName: Full=B aggressive lymphoma protein;
FUNCTION: Involved in inducing the expression of IFN-gamma- responsive genes.
CATALYTIC ACTIVITY: NAD(+) + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
SUBUNIT: Interacts with DTX3L.
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Nucleus. Note=Shuttles between the nucleus and the cytosol. Export to the cytosol depends on the interaction with DTX3L.
TISSUE SPECIFICITY: Expressed in lymphocyte-rich tissues, spleen, lymph nodes, peripheral blood lymphocytes and colonic mucosa. Also expressed in nonhematopoietic tissues such as heart and skeletal muscle. Isoform 2 is the predominant form. Most abundantly expressed in lymphomas with a brisk host inflammatory response. In diffuse large B-cell lymphomas tumors, expressed specifically by malignant B-cells.
INDUCTION: Up-regulated by IFN-gamma in B-cell lymphoma cell lines.
DISEASE: Note=Overexpressed at significantly higher levels in fatal high-risk diffuse large B-cell lymphomas (DLB-CL) compared to cured low-risk tumors. Overexpression in B-cell lymphoma transfectants may promote malignant B-cell migration. May therefore be involved in promoting B-cell migration and dissemination of high-risk DLB-CL tumors.
SIMILARITY: Contains 2 Macro domains.
SIMILARITY: Contains 1 PARP catalytic domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PARP9
Diseases sorted by gene-association score: b-cell lymphomas (8), lymphoma (8), diffuse large b-cell lymphoma (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -47.70145-0.329 Picture PostScript Text
3' UTR -90.40440-0.205 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002589 - A1pp
IPR012317 - Poly(ADP-ribose)pol_cat_dom

Pfam Domains:
PF01661 - Macro domain

SCOP Domains:
50729 - PH domain-like
52949 - Macro domain-like
56399 - ADP-ribosylation

ModBase Predicted Comparative 3D Structure on Q8IXQ6
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001191 transcriptional repressor activity, RNA polymerase II transcription factor binding
GO:0003950 NAD+ ADP-ribosyltransferase activity
GO:0004857 enzyme inhibitor activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0019899 enzyme binding
GO:0042393 histone binding
GO:0044389 ubiquitin-like protein ligase binding
GO:0072570 ADP-D-ribose binding
GO:0097677 STAT family protein binding
GO:0070403 NAD+ binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0002230 positive regulation of defense response to virus by host
GO:0002376 immune system process
GO:0006281 DNA repair
GO:0006302 double-strand break repair
GO:0006471 protein ADP-ribosylation
GO:0006974 cellular response to DNA damage stimulus
GO:0010608 posttranscriptional regulation of gene expression
GO:0010629 negative regulation of gene expression
GO:0016477 cell migration
GO:0034356 NAD biosynthesis via nicotinamide riboside salvage pathway
GO:0035563 positive regulation of chromatin binding
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein
GO:0043086 negative regulation of catalytic activity
GO:0045087 innate immune response
GO:0045893 positive regulation of transcription, DNA-templated
GO:0051607 defense response to virus
GO:0060330 regulation of response to interferon-gamma
GO:0060335 positive regulation of interferon-gamma-mediated signaling pathway
GO:1900182 positive regulation of protein localization to nucleus
GO:2001034 positive regulation of double-strand break repair via nonhomologous end joining
GO:0070212 protein poly-ADP-ribosylation

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0016020 membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  LF210603 - JP 2014500723-A/18106: Polycomb-Associated Non-Coding RNAs.
MA446180 - JP 2018138019-A/18106: Polycomb-Associated Non-Coding RNAs.
LF385124 - JP 2014500723-A/192627: Polycomb-Associated Non-Coding RNAs.
BC039580 - Homo sapiens poly (ADP-ribose) polymerase family, member 9, mRNA (cDNA clone MGC:48722 IMAGE:5416494), complete cds.
AF307338 - Homo sapiens B aggressive lymphoma long isoform (BAL) mRNA, complete cds.
AF307339 - Homo sapiens B aggressive lymphoma short isoform (BAL) mRNA, complete cds.
AK130147 - Homo sapiens cDNA FLJ26637 fis, clone MPE00348, highly similar to Homo sapiens B aggressive lymphoma gene (BAL).
AL713679 - Homo sapiens mRNA; cDNA DKFZp761I1617 (from clone DKFZp761I1617).
AK123412 - Homo sapiens cDNA FLJ41418 fis, clone BRHIP2002122, highly similar to Homo sapiens B aggressive lymphoma long isoform (BAL) mRNA.
AL832929 - Homo sapiens mRNA; cDNA DKFZp666B0810 (from clone DKFZp666B0810).
BX648869 - Homo sapiens mRNA; cDNA DKFZp686M15238 (from clone DKFZp686M15238).
JD502898 - Sequence 483922 from Patent EP1572962.
AK299107 - Homo sapiens cDNA FLJ54723 complete cds, highly similar to Poly (ADP-ribose) polymerase 9 (EC 2.4.2.30).
AK292959 - Homo sapiens cDNA FLJ75114 complete cds, highly similar to Homo sapiens poly (ADP-ribose) polymerase family, member 9, mRNA.
JD327507 - Sequence 308531 from Patent EP1572962.
JD303457 - Sequence 284481 from Patent EP1572962.
JD510549 - Sequence 491573 from Patent EP1572962.
AK313494 - Homo sapiens cDNA, FLJ94047, highly similar to Homo sapiens poly (ADP-ribose) polymerase family, member 9 (PARP9), mRNA.
AB209742 - Homo sapiens mRNA for B aggressive lymphoma gene variant protein.
BC017463 - Homo sapiens poly (ADP-ribose) polymerase family, member 9, mRNA (cDNA clone IMAGE:4862464).
LF339153 - JP 2014500723-A/146656: Polycomb-Associated Non-Coding RNAs.
LF339152 - JP 2014500723-A/146655: Polycomb-Associated Non-Coding RNAs.
LF339150 - JP 2014500723-A/146653: Polycomb-Associated Non-Coding RNAs.
LF213388 - JP 2014500723-A/20891: Polycomb-Associated Non-Coding RNAs.
MA620701 - JP 2018138019-A/192627: Polycomb-Associated Non-Coding RNAs.
MA574730 - JP 2018138019-A/146656: Polycomb-Associated Non-Coding RNAs.
MA574729 - JP 2018138019-A/146655: Polycomb-Associated Non-Coding RNAs.
MA574727 - JP 2018138019-A/146653: Polycomb-Associated Non-Coding RNAs.
MA448965 - JP 2018138019-A/20891: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8IXQ6 (Reactome details) participates in the following event(s):

R-HSA-197264 Nicotinamide salvaging
R-HSA-196807 Nicotinate metabolism
R-HSA-196849 Metabolism of water-soluble vitamins and cofactors
R-HSA-196854 Metabolism of vitamins and cofactors
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8KA94, B2R8S9, BAL , BAL1 , E9PFM7, NR_170864, PARP9_HUMAN, Q8IXQ6, Q8TCP3, Q9BZL8, Q9BZL9, uc330jtd.1, uc330jtd.2
UCSC ID: ENST00000682323.1_4
RefSeq Accession: NM_001146105.2
Protein: Q8IXQ6 (aka PARP9_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.