Human Gene PARP10 (ENST00000313028.12_13) from GENCODE V47lift37
  Description: poly(ADP-ribose) polymerase family member 10, transcript variant 3 (from RefSeq NR_134234.2)
Gencode Transcript: ENST00000313028.12_13
Gencode Gene: ENSG00000178685.14_18
Transcript (Including UTRs)
   Position: hg19 chr8:145,051,326-145,060,628 Size: 9,303 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr8:145,051,652-145,060,527 Size: 8,876 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:145,051,326-145,060,628)mRNA (may differ from genome)Protein (1025 aa)
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-  Comments and Description Text from UniProtKB
  ID: PAR10_HUMAN
DESCRIPTION: RecName: Full=Poly [ADP-ribose] polymerase 10; Short=PARP-10; EC=2.4.2.30; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 10; Short=ARTD10;
FUNCTION: May play a role in cell proliferation. May be required for the maintenance of cell cycle progression.
CATALYTIC ACTIVITY: NAD(+) + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
SUBUNIT: Interacts with MYC.
SUBCELLULAR LOCATION: Nucleus, nucleolus. Cytoplasm. Note=Shuttles between the nuclear and cytoplasmic compartment. A subpopulation concentrates in the nucleolus during late G1/S phase.
TISSUE SPECIFICITY: Highly expressed in spleen and thymus. Intermediate levels in liver, kidney, pancreas, prostate, testis, ovary, intestine, and leukocytes. Low expression in heart, brain, placenta, lung, skeletal muscle, and colon.
PTM: Stimulated through its phosphorylation by CDK2. Acquires CDK- dependent phosphorylation through late-G1 to S phase, and from prometaphase to cytokinesis in the nucleolar organizing regions. Phosphorylation is suppressed in growth-arrested cells.
SIMILARITY: Contains 1 PARP catalytic domain.
SEQUENCE CAUTION: Sequence=BAC11498.1; Type=Frameshift; Positions=965;

-  Primer design for this transcript
 

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Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PARP10
Diseases sorted by gene-association score: arts syndrome (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 43.19 RPKM in Spleen
Total median expression: 709.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -51.30101-0.508 Picture PostScript Text
3' UTR -158.70326-0.487 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR012677 - Nucleotide-bd_a/b_plait
IPR012317 - Poly(ADP-ribose)pol_cat_dom
IPR003903 - Ubiquitin-int_motif

Pfam Domains:
PF00644 - Poly(ADP-ribose) polymerase catalytic domain

SCOP Domains:
56399 - ADP-ribosylation
54928 - RNA-binding domain, RBD

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DHX - NMR MuPIT 3HKV - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q53GL7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003950 NAD+ ADP-ribosyltransferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0016757 transferase activity, transferring glycosyl groups
GO:0070530 K63-linked polyubiquitin binding

Biological Process:
GO:0006471 protein ADP-ribosylation
GO:0010629 negative regulation of gene expression
GO:0010847 regulation of chromatin assembly
GO:0032088 negative regulation of NF-kappaB transcription factor activity
GO:0034356 NAD biosynthesis via nicotinamide riboside salvage pathway
GO:0045071 negative regulation of viral genome replication
GO:0048147 negative regulation of fibroblast proliferation
GO:0070212 protein poly-ADP-ribosylation
GO:0070213 protein auto-ADP-ribosylation
GO:1900045 negative regulation of protein K63-linked ubiquitination

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  LF210321 - JP 2014500723-A/17824: Polycomb-Associated Non-Coding RNAs.
AK124017 - Homo sapiens cDNA FLJ42023 fis, clone SPLEN2035318.
AK129821 - Homo sapiens cDNA FLJ26310 fis, clone DMC08768.
AK128537 - Homo sapiens cDNA FLJ46695 fis, clone TRACH3013043, highly similar to Homo sapiens poly (ADP-ribose) polymerase family, member 10 (PARP10), mRNA.
LF337094 - JP 2014500723-A/144597: Polycomb-Associated Non-Coding RNAs.
AK027370 - Homo sapiens cDNA FLJ14464 fis, clone MAMMA1000309.
BC014229 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:4545211), partial cds.
AK075250 - Homo sapiens cDNA FLJ90769 fis, clone THYRO1000846.
AK097596 - Homo sapiens cDNA FLJ40277 fis, clone TESTI2027239.
BC019030 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:4554168), partial cds.
JD391738 - Sequence 372762 from Patent EP1572962.
JD219470 - Sequence 200494 from Patent EP1572962.
JD203554 - Sequence 184578 from Patent EP1572962.
AK303317 - Homo sapiens cDNA FLJ57250 complete cds, highly similar to Homo sapiens poly (ADP-ribose) polymerase family, member 10 (PARP10), mRNA.
JD139737 - Sequence 120761 from Patent EP1572962.
AK222914 - Homo sapiens mRNA for poly (ADP-ribose) polymerase family, member 10 variant, clone: HRC03908.
JD116009 - Sequence 97033 from Patent EP1572962.
BC132961 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone MGC:164592 IMAGE:40146983), complete cds.
BC144235 - Homo sapiens cDNA clone IMAGE:9052755.
JD429204 - Sequence 410228 from Patent EP1572962.
BC136542 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone MGC:168155 IMAGE:9020532), complete cds.
LF337095 - JP 2014500723-A/144598: Polycomb-Associated Non-Coding RNAs.
BC020378 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:3462485).
BC035485 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:5165135), with apparent retained intron.
BC030549 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:5212060).
DQ570509 - Homo sapiens piRNA piR-30621, complete sequence.
AK309251 - Homo sapiens cDNA, FLJ99292.
AK308657 - Homo sapiens cDNA, FLJ98698.
JD189640 - Sequence 170664 from Patent EP1572962.
JD227258 - Sequence 208282 from Patent EP1572962.
JD533546 - Sequence 514570 from Patent EP1572962.
JD199610 - Sequence 180634 from Patent EP1572962.
LQ980397 - Sequence 43 from Patent WO2013050532.
MA445898 - JP 2018138019-A/17824: Polycomb-Associated Non-Coding RNAs.
MA572671 - JP 2018138019-A/144597: Polycomb-Associated Non-Coding RNAs.
MA572672 - JP 2018138019-A/144598: Polycomb-Associated Non-Coding RNAs.
MP015237 - Sequence 440 from Patent WO2019016252.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q53GL7 (Reactome details) participates in the following event(s):

R-HSA-197264 Nicotinamide salvaging
R-HSA-196807 Nicotinate metabolism
R-HSA-196849 Metabolism of water-soluble vitamins and cofactors
R-HSA-196854 Metabolism of vitamins and cofactors
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000313028.1, ENST00000313028.10, ENST00000313028.11, ENST00000313028.2, ENST00000313028.3, ENST00000313028.4, ENST00000313028.5, ENST00000313028.6, ENST00000313028.7, ENST00000313028.8, ENST00000313028.9, NR_134234, PAR10_HUMAN, PARP10 , Q53GL7, Q8N2I0, Q8WV05, Q96CH7, Q96K72, uc317pic.1, uc317pic.2
UCSC ID: ENST00000313028.12_13
RefSeq Accession: NM_032789.5
Protein: Q53GL7 (aka PAR10_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.