Human Gene PAM (ENST00000438793.8_8) from GENCODE V47lift37
  Description: peptidylglycine alpha-amidating monooxygenase, transcript variant 11 (from RefSeq NM_001364584.2)
Gencode Transcript: ENST00000438793.8_8
Gencode Gene: ENSG00000145730.21_20
Transcript (Including UTRs)
   Position: hg19 chr5:102,091,009-102,365,420 Size: 274,412 Total Exon Count: 26 Strand: +
Coding Region
   Position: hg19 chr5:102,201,900-102,364,769 Size: 162,870 Coding Exon Count: 25 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:102,091,009-102,365,420)mRNA (may differ from genome)Protein (973 aa)
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-  Comments and Description Text from UniProtKB
  ID: AMD_HUMAN
DESCRIPTION: RecName: Full=Peptidyl-glycine alpha-amidating monooxygenase; Short=PAM; Includes: RecName: Full=Peptidylglycine alpha-hydroxylating monooxygenase; Short=PHM; EC=1.14.17.3; Includes: RecName: Full=Peptidyl-alpha-hydroxyglycine alpha-amidating lyase; EC=4.3.2.5; AltName: Full=Peptidylamidoglycolate lyase; Short=PAL; Flags: Precursor;
FUNCTION: Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.
CATALYTIC ACTIVITY: Peptidylglycine + ascorbate + O(2) = peptidyl(2-hydroxyglycine) + dehydroascorbate + H(2)O.
CATALYTIC ACTIVITY: Peptidylamidoglycolate = peptidyl amide + glyoxylate.
COFACTOR: Zinc; for the lyase reaction.
COFACTOR: Binds 2 copper ions per subunit; For the monoxygenase reaction.
ENZYME REGULATION: Inhibited by EDTA, phenylglyoxal and diethyl pyrocarbonate.
SUBUNIT: Monomer. Interacts with RASSF9 (By similarity).
SUBCELLULAR LOCATION: Isoform 1: Membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 2: Membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 3: Secreted. Note=Secreted from secretory granules.
SUBCELLULAR LOCATION: Isoform 4: Secreted. Note=Secreted from secretory granules.
SIMILARITY: In the C-terminal section; belongs to the peptidyl- alpha-hydroxyglycine alpha-amidating lyase family.
SIMILARITY: In the N-terminal section; belongs to the copper type II ascorbate-dependent monooxygenase family.
SIMILARITY: Contains 5 NHL repeats.
SEQUENCE CAUTION: Sequence=AAD01439.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PAM
Diseases sorted by gene-association score: menkes disease (12), phaeohyphomycosis (11), gestational trophoblastic neoplasm (9), peptic esophagitis (8), postpoliomyelitis syndrome (7), trophoblastic neoplasm (6), hiatus hernia (5), germ cell and embryonal cancer (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 279.09 RPKM in Heart - Atrial Appendage
Total median expression: 1552.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -210.60417-0.505 Picture PostScript Text
3' UTR -136.80651-0.210 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011042 - 6-blade_b-propeller_TolB-like
IPR014784 - Cu2_ascorb_mOase-like_C
IPR020611 - Cu2_ascorb_mOase_CS-1
IPR014783 - Cu2_ascorb_mOase_CS-2
IPR000323 - Cu2_ascorb_mOase_N
IPR001258 - NHL_repeat
IPR013017 - NHL_repeat_subgr
IPR000720 - Pep_amidat_mOase
IPR008977 - PHM/PNGase_F_dom

Pfam Domains:
PF01082 - Copper type II ascorbate-dependent monooxygenase, N-terminal domain
PF01436 - NHL repeat
PF03712 - Copper type II ascorbate-dependent monooxygenase, C-terminal domain

SCOP Domains:
49742 - PHM/PNGase F
50952 - Soluble quinoprotein glucose dehydrogenase
50956 - Thermostable phytase (3-phytase)
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
117289 - Nucleoporin domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like

ModBase Predicted Comparative 3D Structure on P19021
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004497 monooxygenase activity
GO:0004504 peptidylglycine monooxygenase activity
GO:0004598 peptidylamidoglycolate lyase activity
GO:0005507 copper ion binding
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016491 oxidoreductase activity
GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen
GO:0016829 lyase activity
GO:0019901 protein kinase binding
GO:0031418 L-ascorbic acid binding
GO:0046872 metal ion binding

Biological Process:
GO:0001519 peptide amidation
GO:0001666 response to hypoxia
GO:0001676 long-chain fatty acid metabolic process
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006518 peptide metabolic process
GO:0007417 central nervous system development
GO:0007507 heart development
GO:0007595 lactation
GO:0008152 metabolic process
GO:0009268 response to pH
GO:0009404 toxin metabolic process
GO:0018032 protein amidation
GO:0019538 protein metabolic process
GO:0022602 ovulation cycle process
GO:0032355 response to estradiol
GO:0032956 regulation of actin cytoskeleton organization
GO:0042476 odontogenesis
GO:0042493 response to drug
GO:0046688 response to copper ion
GO:0050708 regulation of protein secretion
GO:0051260 protein homooligomerization
GO:0051384 response to glucocorticoid
GO:0055114 oxidation-reduction process
GO:0060135 maternal process involved in female pregnancy
GO:0060173 limb development

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005802 trans-Golgi network
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030141 secretory granule
GO:0030667 secretory granule membrane
GO:0043005 neuron projection
GO:0043025 neuronal cell body
GO:0043204 perikaryon
GO:0048471 perinuclear region of cytoplasm
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC018127 - Homo sapiens peptidylglycine alpha-amidating monooxygenase, mRNA (cDNA clone MGC:9210 IMAGE:3887394), complete cds.
M37721 - Human peptidylglycine alpha-amidating monooxygenase mRNA, complete cds.
AK296521 - Homo sapiens cDNA FLJ53473 complete cds, highly similar to Peptidyl-glycine alpha-amidating monooxygenase precursor (EC 1.14.17.3).
E02516 - cDNA encoding C-terminus alpha amidinotransferase(chT201).
AK290158 - Homo sapiens cDNA FLJ77034 complete cds, highly similar to Homo sapiens peptidylglycine alpha-amidating monooxygenase (PAM), transcript variant 1, mRNA.
S75037 - pancreatic peptidylglycine alpha-amidating monooxygenase=membrane-bound isoform {alternatively spliced, clone PAM-3, transmembrane domain (Ba region)} [human, islet cell tumor cell line QGP-1, mRNA Partial, 2994 nt].
S75038 - pancreatic peptidylglycine alpha-amidating monooxygenase=secretory isoform {clone PAM-15} [human, islet cell tumor cell line QCP-1, mRNA Partial, 2795 nt].
E02518 - cDNA encoding C-terminus alpha amidinotransferase(chT101).
AB527419 - Synthetic construct DNA, clone: pF1KB5095, Homo sapiens PAM gene for peptidylglycine alpha-amidating monooxygenase, without stop codon, in Flexi system.
BT007419 - Homo sapiens peptidylglycine alpha-amidating monooxygenase mRNA, complete cds.
AB095007 - Homo sapiens mRNA for peptidylglycine alpha-amidating monooxygenase, complete cds.
AF010472 - Homo sapiens alpha-amidating monooxygenase mRNA, complete cds.
JD267791 - Sequence 248815 from Patent EP1572962.
JD236142 - Sequence 217166 from Patent EP1572962.
JD083735 - Sequence 64759 from Patent EP1572962.
JD461917 - Sequence 442941 from Patent EP1572962.
JD460769 - Sequence 441793 from Patent EP1572962.
JD158177 - Sequence 139201 from Patent EP1572962.
JD343204 - Sequence 324228 from Patent EP1572962.
JD458768 - Sequence 439792 from Patent EP1572962.
E02517 - cDNA encoding C-terminus alpha amidinotransferase(chT2).
U19965 - Homo sapiens peptidylglycine alpha-amidating monooxygenase mRNA, splice variant hPAM-C, partial cds.
U19966 - Homo sapiens peptidylglycine alpha-amidating monooxygenase mRNA, splice variant hPAM-D, partial cds.
AF035320 - Homo sapiens clone 23731 peptidylglycine alpha-amidating monooxygenase mRNA, partial cds.
JD166526 - Sequence 147550 from Patent EP1572962.
JD348886 - Sequence 329910 from Patent EP1572962.
JD027479 - Sequence 8503 from Patent EP1572962.
JD557256 - Sequence 538280 from Patent EP1572962.
JD030817 - Sequence 11841 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NMR0, A8K293, AMD_HUMAN, ENST00000438793.1, ENST00000438793.2, ENST00000438793.3, ENST00000438793.4, ENST00000438793.5, ENST00000438793.6, ENST00000438793.7, NM_001364584, O43211, O95080, P19021, PAM , Q16252, Q16253, Q54A45, Q86U53, Q8WVC7, Q9UCG0, uc320gzz.1, uc320gzz.2
UCSC ID: ENST00000438793.8_8
RefSeq Accession: NM_001177306.2
Protein: P19021 (aka AMD_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.