Human Gene PAEP (ENST00000479141.6_4) from GENCODE V47lift37
  Description: progestagen associated endometrial protein, transcript variant 2 (from RefSeq NM_002571.4)
Gencode Transcript: ENST00000479141.6_4
Gencode Gene: ENSG00000122133.17_12
Transcript (Including UTRs)
   Position: hg19 chr9:138,453,602-138,458,801 Size: 5,200 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr9:138,453,648-138,457,647 Size: 4,000 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:138,453,602-138,458,801)mRNA (may differ from genome)Protein (180 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PAEP_HUMAN
DESCRIPTION: RecName: Full=Glycodelin; Short=GD; AltName: Full=Placental protein 14; Short=PP14; AltName: Full=Pregnancy-associated endometrial alpha-2 globulin; Short=PAEG; Short=PEG; AltName: Full=Progestagen-associated endometrial protein; AltName: Full=Progesterone-associated endometrial protein; Flags: Precursor;
FUNCTION: This protein is, quantitatively, the main protein synthesized and secreted in the endometrium from mid-luteal phase of the menstrual cycle and during the first semester of pregnancy.
SUBUNIT: Homodimer.
SUBCELLULAR LOCATION: Secreted.
PTM: At least two differentially glycosylated forms are found. Glycodelin-A (GdA) (amniotic fluid) with contraceptive and immunosuppressive activities and glycodelin-S (Gds) (seminal plasma) whose role is not yet known. The gender-specific glycosylation may serve to regulate key process involved in human reproduction.
SIMILARITY: Belongs to the calycin superfamily. Lipocalin family.
SEQUENCE CAUTION: Sequence=AAA60147.1; Type=Erroneous initiation; Sequence=CAB43305.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PAEP
Diseases sorted by gene-association score: ectopic pregnancy (6), endometriosis (5), endometrial cancer (4), endometrial adenocarcinoma (3), premature ovarian failure 1 (2), holoprosencephaly 1 (1), proximal symphalangism (1), multiple synostoses syndrome (1), acromesomelic dysplasia (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.06 RPKM in Fallopian Tube
Total median expression: 2.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -9.0046-0.196 Picture PostScript Text
3' UTR -148.40403-0.368 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002447 - Blactoglobulin
IPR012674 - Calycin
IPR011038 - Calycin-like
IPR002345 - Lipocalin
IPR022272 - Lipocalin_CS
IPR000566 - Lipocln_cytosolic_FA-bd_dom

Pfam Domains:
PF00061 - Lipocalin / cytosolic fatty-acid binding protein family

SCOP Domains:
47598 - Ribbon-helix-helix
50814 - Lipocalins

ModBase Predicted Comparative 3D Structure on P09466
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0036094 small molecule binding

Biological Process:
GO:0006915 apoptotic process
GO:0007275 multicellular organism development
GO:0032725 positive regulation of granulocyte macrophage colony-stimulating factor production
GO:1902491 negative regulation of sperm capacitation
GO:2000359 regulation of binding of sperm to zona pellucida
GO:2000667 positive regulation of interleukin-13 secretion
GO:2000778 positive regulation of interleukin-6 secretion

Cellular Component:
GO:0005576 extracellular region


-  Descriptions from all associated GenBank mRNAs
  AK311730 - Homo sapiens cDNA, FLJ18772.
AK311731 - Homo sapiens cDNA, FLJ18773.
AK309965 - Homo sapiens cDNA, FLJ17007.
AK309983 - Homo sapiens cDNA, FLJ17025.
AK311007 - Homo sapiens cDNA, FLJ18049.
AK311813 - Homo sapiens cDNA, FLJ92074, highly similar to Homo sapiens progestagen-associated endometrial protein (placentalprotein 14, pregnancy-associated endometrial alpha-2-globulin,alpha uterine protein) (PAEP), mRNA.
AK304657 - Homo sapiens cDNA FLJ52183 complete cds, highly similar to Glycodelin precursor.
J04129 - Human placental protein 14 (PP14) mRNA, complete cds.
M61886 - Human pregnancy-associated endometrial alpha2-globulin mRNA, complete cds.
AL050169 - Homo sapiens mRNA; cDNA DKFZp586D0922 (from clone DKFZp586D0922).
JD115683 - Sequence 96707 from Patent EP1572962.
BC069562 - Homo sapiens progestagen-associated endometrial protein, mRNA (cDNA clone MGC:96887 IMAGE:7262096), complete cds.
BC069451 - Homo sapiens progestagen-associated endometrial protein, mRNA (cDNA clone MGC:96970 IMAGE:7262179), complete cds.
AB528962 - Synthetic construct DNA, clone: pF1KB6873, Homo sapiens PAEP gene for progestagen-associated endometrial protein, without stop codon, in Flexi system.
HQ258098 - Synthetic construct Homo sapiens clone IMAGE:100072407 progestagen-associated endometrial protein (PAEP), transcript variant 2 (PAEP) gene, encodes complete protein.
CU686906 - Synthetic construct Homo sapiens gateway clone IMAGE:100022578 5' read PAEP mRNA.
HQ448469 - Synthetic construct Homo sapiens clone IMAGE:100071898; CCSB013789_01 progestagen-associated endometrial protein (placental protein 14, pregnancy-associated endometrial a (PAEP) gene, encodes complete protein.
KJ891746 - Synthetic construct Homo sapiens clone ccsbBroadEn_01140 PAEP gene, encodes complete protein.
DQ884407 - Homo sapiens clone BFC06005 glycodelin precursor mRNA, complete cds.
BC112304 - Homo sapiens progestagen-associated endometrial protein, mRNA (cDNA clone MGC:138509 IMAGE:8327772), complete cds.
BC113728 - Homo sapiens progestagen-associated endometrial protein, mRNA (cDNA clone MGC:142288 IMAGE:8322780), complete cds.
JD366081 - Sequence 347105 from Patent EP1572962.
JD398221 - Sequence 379245 from Patent EP1572962.
JD518327 - Sequence 499351 from Patent EP1572962.
JD498173 - Sequence 479197 from Patent EP1572962.
JD254124 - Sequence 235148 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000479141.1, ENST00000479141.2, ENST00000479141.3, ENST00000479141.4, ENST00000479141.5, NM_002571, P09466, PAEP_HUMAN, Q5T6T1, Q9UG92, uc321xut.1, uc321xut.2
UCSC ID: ENST00000479141.6_4
RefSeq Accession: NM_002571.4
Protein: P09466 (aka PAEP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.