Human Gene NKRF (ENST00000688521.1_4) from GENCODE V47lift37
  Description: Belongs to the CARF family. (from UniProt A0A8I5KX72)
Gencode Transcript: ENST00000688521.1_4
Gencode Gene: ENSG00000186416.18_15
Transcript (Including UTRs)
   Position: hg19 chrX:118,723,315-118,739,958 Size: 16,644 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chrX:118,723,315-118,739,958 Size: 16,644 Coding Exon Count: 4 

Page IndexSequence and LinksPrimersCTDGene AllelesMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:118,723,315-118,739,958)mRNA (may differ from genome)Protein (783 aa)
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-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Descriptions from all associated GenBank mRNAs
  KJ894288 - Synthetic construct Homo sapiens clone ccsbBroadEn_03682 NKRF gene, encodes complete protein.
AJ011812 - Homo sapiens mRNA for transcription factor NRF, partial.
EF165092 - Homo sapiens clone 14 NF-kappaB repressing factor (NKRF) mRNA, partial cds.
EF216689 - Homo sapiens NF-kappaB repressing factor (NRF) mRNA, complete cds.
BC047878 - Homo sapiens NFKB repressing factor, mRNA (cDNA clone MGC:57593 IMAGE:5228666), complete cds.
Y07707 - H.sapiens mRNA for ITBA4 gene.
AY208891 - Homo sapiens transcription factor NRF mRNA, complete cds.
BC068514 - Homo sapiens NFKB repressing factor, mRNA (cDNA clone MGC:87305 IMAGE:5299667), complete cds.
BC040379 - Homo sapiens NFKB repressing factor, mRNA (cDNA clone MGC:24866 IMAGE:4777539), complete cds.
EF165095 - Homo sapiens clone 9 truncated NF-kappaB repressing factor (NKRF) mRNA, partial cds.
EF216688 - Homo sapiens NF-kappaB repressing factor (NRF) mRNA, complete cds.
AB463141 - Synthetic construct DNA, clone: pF1KB9415, Homo sapiens NKRF gene for NF-kappaB repressing factor, without stop codon, in Flexi system.
JD111065 - Sequence 92089 from Patent EP1572962.
JD454389 - Sequence 435413 from Patent EP1572962.
JD095808 - Sequence 76832 from Patent EP1572962.
JD046745 - Sequence 27769 from Patent EP1572962.
JD504045 - Sequence 485069 from Patent EP1572962.
JD476987 - Sequence 458011 from Patent EP1572962.
JD044594 - Sequence 25618 from Patent EP1572962.
JD377049 - Sequence 358073 from Patent EP1572962.
JD039571 - Sequence 20595 from Patent EP1572962.
EF165094 - Homo sapiens clone 25 NF-kappaB repressing factor (NKRF) mRNA, partial cds.
EF165093 - Homo sapiens clone 18 NF-kappaB repressing factor (NKRF) mRNA, partial cds.
EF158333 - Homo sapiens NF-kappaB repressing factor (NKRF) mRNA, partial cds.
EF165091 - Homo sapiens clone 13 NF-kappaB repressing factor (NKRF) mRNA, partial cds.
EF165090 - Homo sapiens clone 10 NF-kappaB repressing factor (NKRF) mRNA, partial cds.
JD284508 - Sequence 265532 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A8I5KX72, A0A8I5KX72_HUMAN, NKRF , NM_001417890, uc330seu.1, uc330seu.2
UCSC ID: ENST00000688521.1_4
RefSeq Accession: NR_163972.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.