Human Gene MMP7 (ENST00000260227.5_7) from GENCODE V47lift37
  Description: matrix metallopeptidase 7 (from RefSeq NM_002423.5)
Gencode Transcript: ENST00000260227.5_7
Gencode Gene: ENSG00000137673.9_9
Transcript (Including UTRs)
   Position: hg19 chr11:102,391,239-102,401,478 Size: 10,240 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr11:102,391,507-102,401,431 Size: 9,925 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:102,391,239-102,401,478)mRNA (may differ from genome)Protein (267 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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MalacardsMGIOMIMPubMedReactomeUniProtKB
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-  Comments and Description Text from UniProtKB
  ID: MMP7_HUMAN
DESCRIPTION: RecName: Full=Matrilysin; EC=3.4.24.23; AltName: Full=Matrin; AltName: Full=Matrix metalloproteinase-7; Short=MMP-7; AltName: Full=Pump-1 protease; AltName: Full=Uterine metalloproteinase; Flags: Precursor;
FUNCTION: Degrades casein, gelatins of types I, III, IV, and V, and fibronectin. Activates procollagenase.
CATALYTIC ACTIVITY: Cleavage of 14-Ala-|-Leu-15 and 16-Tyr-|-Leu- 17 in B chain of insulin. No action on collagen types I, II, IV, V. Cleaves gelatin chain alpha-2(I) > alpha-1(I).
COFACTOR: Binds 2 calcium ions per subunit.
COFACTOR: Binds 2 zinc ions per subunit.
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix (Probable).
DOMAIN: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
SIMILARITY: Belongs to the peptidase M10A family.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/mmp7/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MMP7
Diseases sorted by gene-association score: brain glioblastoma multiforme (22), light chain deposition disease (18), spastic entropion (14), focal myositis (12), rectal neoplasm (10), biliary atresia (9), colorectal cancer (9), adult astrocytic tumour (8), pediatric multiple sclerosis (8), mid-dermal elastolysis (7), h. pylori infection (7), internal hemorrhoid (7), stomach cancer (7), senile ectropion (6), coronary artery aneurysm (6), salivary gland cancer (6), septic arthritis (5), pulmonary fibrosis, idiopathic (5), parotid gland cancer (5), esophageal cancer (3), lung cancer (3), pancreatic cancer (3), endometrial cancer (2), prostate cancer (2), ovarian cancer, somatic (1), gastrointestinal system cancer (1), gastric cancer, somatic (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 121.43 RPKM in Minor Salivary Gland
Total median expression: 340.55 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.5047-0.160 Picture PostScript Text
3' UTR -45.00268-0.168 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024079 - MetalloPept_cat_dom
IPR001818 - Pept_M10_metallopeptidase
IPR021190 - Pept_M10A_matrixin
IPR021158 - Pept_M10A_Zn_BS
IPR006026 - Peptidase_Metallo
IPR002477 - Peptidoglycan-bd-like

Pfam Domains:
PF00413 - Matrixin
PF01471 - Putative peptidoglycan binding domain

SCOP Domains:
47090 - PGBD-like
55486 - Metalloproteases ("zincins"), catalytic domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1MMP - X-ray MuPIT 1MMQ - X-ray MuPIT 1MMR - X-ray MuPIT 2DDY - NMR MuPIT 2Y6C - X-ray MuPIT 2Y6D - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P09237
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity
GO:0004252 serine-type endopeptidase activity
GO:0005515 protein binding
GO:0008201 heparin binding
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006508 proteolysis
GO:0007568 aging
GO:0022617 extracellular matrix disassembly
GO:0030574 collagen catabolic process
GO:0031667 response to nutrient levels
GO:0044849 estrous cycle
GO:0060135 maternal process involved in female pregnancy
GO:0071260 cellular response to mechanical stimulus

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0009986 cell surface
GO:0031012 extracellular matrix
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  Z11887 - H.sapiens PUMP-1 gene encoding PUMP.
BC003635 - Homo sapiens matrix metallopeptidase 7 (matrilysin, uterine), mRNA (cDNA clone MGC:3913 IMAGE:3545760), complete cds.
AK222980 - Homo sapiens mRNA for matrix metalloproteinase 7 preproprotein variant, clone: HSI04850.
X07819 - Human pump-1 mRNA homolog. to metalloproteinase, collagenase and stromelysin.
JD308330 - Sequence 289354 from Patent EP1572962.
JD501342 - Sequence 482366 from Patent EP1572962.
JD502038 - Sequence 483062 from Patent EP1572962.
DQ893132 - Synthetic construct clone IMAGE:100005762; FLH194090.01X; RZPDo839F0479D matrix metallopeptidase 7 (matrilysin, uterine) (MMP7) gene, encodes complete protein.
EU176770 - Synthetic construct Homo sapiens clone IMAGE:100011628; FLH263977.01L; RZPDo839B03245D matrix metallopeptidase 7 (matrilysin, uterine) (MMP7) gene, encodes complete protein.
KJ897196 - Synthetic construct Homo sapiens clone ccsbBroadEn_06590 MMP7 gene, encodes complete protein.
AB528509 - Synthetic construct DNA, clone: pF1KB6357, Homo sapiens MMP7 gene for matrix metallopeptidase 7, without stop codon, in Flexi system.
CU678546 - Synthetic construct Homo sapiens gateway clone IMAGE:100018673 5' read MMP7 mRNA.
AK309687 - Homo sapiens cDNA, FLJ99728.
DQ399600 - Homo sapiens matrix metalloproteinase 7 (MMP7) mRNA, partial cds.
AK293359 - Homo sapiens cDNA FLJ56650 complete cds, highly similar to Matrilysin precursor (EC 3.4.24.23).

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P09237 (Reactome details) participates in the following event(s):

R-HSA-1592362 Activation of proMMP7 by MMP3
R-HSA-1604763 Autocatalytic activation of MMP7
R-HSA-1604712 Initial activation of proMMP7 by trypsin
R-HSA-1454791 MMP2, MMP7, MMP9 bind CD44
R-HSA-1454781 MMP1,3,13 (2, 7-12, 19) binding by Alpha-2 macroglubulin
R-HSA-8940561 MMP7 cleaves OPTC
R-HSA-1604359 Initial activation of proMMP2 by MMP1, 7
R-HSA-1592297 Full activation of MMP1
R-HSA-1564142 Collagen type IV degradation by MMP2,3,4,9,10,12
R-HSA-2168923 Collagen type XVIII endostatin release
R-HSA-1566962 Elastin degradation by elastin-degrading extracellular proteinases
R-HSA-1566981 Fibronectin degradation by MMP1, 3, 7, 12, 13, 19, CTSS
R-HSA-2533970 NID1 degradation by MMP3, 7
R-HSA-4086205 OPN (osteopontin) degradation by MMP3, MMP7
R-HSA-2534248 DCN (decorin) degradation by MMP2, MMP3, MMP7
R-HSA-1454843 E-cadherin degradation by MMP3, MMP7 and plasmin.
R-NUL-2534162 E-cadherin strand dimer degradation by MMP3, MMP7 and Plasmin
R-HSA-1566979 Laminin-332 degradation by laminin-322 degrading extracellular proteinases
R-HSA-3791149 Brevican degradation by MMP1, 2, 3, 7,8,10,13,19
R-HSA-3791295 Aggrecan degradation by MMP1,2,3,7,9,12,13
R-NUL-3814821 Aggrecan degradation by MMP1,2,3,7,9,12,13
R-HSA-1592436 Initial activation of proMMP9 by MMPs
R-HSA-1604690 Activation of MMP9 intermediate form by MMPs
R-HSA-2213200 Release of endostatin-like peptides
R-HSA-1592389 Activation of Matrix Metalloproteinases
R-HSA-1474228 Degradation of the extracellular matrix
R-HSA-1442490 Collagen degradation
R-HSA-1474244 Extracellular matrix organization
R-HSA-2022090 Assembly of collagen fibrils and other multimeric structures
R-HSA-1474290 Collagen formation

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000260227.1, ENST00000260227.2, ENST00000260227.3, ENST00000260227.4, MMP7_HUMAN, MPSL1, NM_002423, P09237, PUMP1, Q9BTK9, uc317gje.1, uc317gje.2
UCSC ID: ENST00000260227.5_7
RefSeq Accession: NM_002423.5
Protein: P09237 (aka MMP7_HUMAN or MM07_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.