Human Gene MAPK12 (ENST00000215659.13_7) from GENCODE V47lift37
  Description: mitogen-activated protein kinase 12, transcript variant 1 (from RefSeq NM_002969.6)
Gencode Transcript: ENST00000215659.13_7
Gencode Gene: ENSG00000188130.14_10
Transcript (Including UTRs)
   Position: hg19 chr22:50,691,330-50,700,112 Size: 8,783 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr22:50,691,830-50,699,938 Size: 8,109 Coding Exon Count: 12 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:50,691,330-50,700,112)mRNA (may differ from genome)Protein (367 aa)
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-  Comments and Description Text from UniProtKB
  ID: MK12_HUMAN
DESCRIPTION: RecName: Full=Mitogen-activated protein kinase 12; Short=MAP kinase 12; Short=MAPK 12; EC=2.7.11.24; AltName: Full=Extracellular signal-regulated kinase 6; Short=ERK-6; AltName: Full=Mitogen-activated protein kinase p38 gamma; Short=MAP kinase p38 gamma; AltName: Full=Stress-activated protein kinase 3;
FUNCTION: Serine/threonine kinase which acts as an essential component of the MAP kinase signal transduction pathway. MAPK12 is one of the four p38 MAPKs which play an important role in the cascades of cellular responses evoked by extracellular stimuli such as proinflammatory cytokines or physical stress leading to direct activation of transcription factors such as ELK1 and ATF2. Accordingly, p38 MAPKs phosphorylate a broad range of proteins and it has been estimated that they may have approximately 200 to 300 substrates each. Some of the targets are downstream kinases such as MAPKAPK2, which are activated through phosphorylation and further phosphorylate additional targets. Plays a role in myoblast differentiation and also in the down-regulation of cyclin D1 in response to hypoxia in adrenal cells suggesting MAPK12 may inhibit cell proliferation while promoting differentiation. Phosphorylates DLG1. Following osmotic shock, MAPK12 in the cell nucleus increases its association with nuclear DLG1, thereby causing dissociation of DLG1-SFPQ complexes. This function is independent of its catalytic activity and could affect mRNA processing and/or gene transcription to aid cell adaptation to osmolarity changes in the environment. Regulates UV-induced checkpoint signaling and repair of UV-induced DNA damage and G2 arrest after gamma- radiation exposure. MAPK12 is involved in the regulation of SLC2A1 expression and basal glucose uptake in L6 myotubes; and negatively regulates SLC2A4 expression and contraction-mediated glucose uptake in adult skeletal muscle. C-Jun (JUN) phosphorylation is stimulated by MAPK14 and inhibited by MAPK12, leading to a distinct AP-1 regulation. MAPK12 is required for the normal kinetochore localization of PLK1, prevents chromosomal instability and supports mitotic cell viability. MAPK12-signaling is also positively regulating the expansion of transient amplifying myogenic precursor cells during muscle growth and regeneration.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Binds 2 magnesium ions.
ENZYME REGULATION: Activated by phosphorylation on threonine and tyrosine. MAP2K3/MKK3 and MAP2K6/MKK6 are both essential for the activation of MAPK12 induced by environmental stress, whereas MAP2K6/MKK6 is the major MAPK12 activator in response to TNF- alpha.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=37 uM for ATP; KM=313 uM for EGFR substrate peptide; KM=254 uM for GST-ATF2;
SUBUNIT: Monomer. Interacts with the PDZ domain of the syntrophin SNTA1. Interacts with SH3BP5. Interacts with LIN7C, SCRIB and SYNJ2BP (By similarity).
INTERACTION: Q16512:PKN1; NbExp=2; IntAct=EBI-602406, EBI-602382;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Mitochondrion. Note=Mitochondrial when associated with SH3BP5. In skeletal muscle co-localizes with SNTA1 at the neuromuscular junction and throughout the sarcolemma (By similarity).
TISSUE SPECIFICITY: Highly expressed in skeletal muscle and heart.
INDUCTION: Expression of MAPK12 is down-regulation by MAPK14 activation.
DOMAIN: The TXY motif contains the threonine and tyrosine residues whose phosphorylation activates the MAP kinases.
PTM: Dually phosphorylated on Thr-183 and Tyr-185 by MAP2K3/MKK3 and MAP2K6/MKK6, which activates the enzyme.
PTM: Ubiquitinated. Ubiquitination leads to degradation by the proteasome pathway.
DISEASE: Note=MAPK is overexpressed in highly metastatic breast cancer cell lines and its expression is preferentially associated with basal-like and metastatic phenotypes of breast tumor samples.
SIMILARITY: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. MAP kinase subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MAPK12
Diseases sorted by gene-association score: breast cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 62.17 RPKM in Muscle - Skeletal
Total median expression: 356.65 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -109.10174-0.627 Picture PostScript Text
3' UTR -218.00500-0.436 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR003527 - MAP_kinase_CS
IPR008352 - MAPK_p38
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom

Pfam Domains:
PF00069 - Protein kinase domain
PF03109 - ABC1 atypical kinase-like domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1CM8 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P53778
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004707 MAP kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0000165 MAPK cascade
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006468 protein phosphorylation
GO:0006975 DNA damage induced protein phosphorylation
GO:0007049 cell cycle
GO:0007050 cell cycle arrest
GO:0007165 signal transduction
GO:0007517 muscle organ development
GO:0010468 regulation of gene expression
GO:0010952 positive regulation of peptidase activity
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0045445 myoblast differentiation
GO:0045786 negative regulation of cell cycle
GO:0051149 positive regulation of muscle cell differentiation

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AB209419 - Homo sapiens mRNA for histone deacetylase 10 variant protein.
BC015741 - Homo sapiens mitogen-activated protein kinase 12, mRNA (cDNA clone MGC:23021 IMAGE:4907996), complete cds.
LF385069 - JP 2014500723-A/192572: Polycomb-Associated Non-Coding RNAs.
BX640648 - Homo sapiens mRNA; cDNA DKFZp686M02159 (from clone DKFZp686M02159).
Y10487 - H.sapiens mRNA for stress activated protein kinase-3.
X79483 - H.sapiens ERK6 mRNA for extracellular signal regulated kinase.
CR456515 - Homo sapiens MAPK12 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.MAPK12).
U66243 - Homo sapiens p38gamma MAP Kinase mRNA, complete cds.
JD353336 - Sequence 334360 from Patent EP1572962.
CU013115 - Homo sapiens MAPK12, mRNA (cDNA clone IMAGE:100000372), complete cds, with stop codon, in Gateway system.
KJ897517 - Synthetic construct Homo sapiens clone ccsbBroadEn_06911 MAPK12 gene, encodes complete protein.
KJ905312 - Synthetic construct Homo sapiens clone ccsbBroadEn_14836 MAPK12 gene, encodes complete protein.
DQ892787 - Synthetic construct clone IMAGE:100005417; FLH189727.01X; RZPDo839A0775D mitogen-activated protein kinase 12 (MAPK12) gene, encodes complete protein.
DQ896034 - Synthetic construct Homo sapiens clone IMAGE:100010494; FLH189723.01L; RZPDo839A0765D mitogen-activated protein kinase 12 (MAPK12) gene, encodes complete protein.
CU013403 - Homo sapiens MAPK12, mRNA (cDNA clone IMAGE:100000276), complete cds, without stop codon, in Gateway system.
AB587470 - Synthetic construct DNA, clone: pF1KB8452, Homo sapiens MAPK12 gene for mitogen-activated protein kinase 12, without stop codon, in Flexi system.
AK098058 - Homo sapiens cDNA FLJ40739 fis, clone TKIDN2004748, highly similar to Mitogen-activated protein kinase 12 (EC 2.7.11.24).
AK123665 - Homo sapiens cDNA FLJ41671 fis, clone HCASM2001301, highly similar to Mitogen-activated protein kinase 12 (EC 2.7.11.24).
AK307724 - Homo sapiens cDNA, FLJ97672.
AK289770 - Homo sapiens cDNA FLJ78463 complete cds.
AK294422 - Homo sapiens cDNA FLJ55840 complete cds, highly similar to Mitogen-activated protein kinase 12 (EC 2.7.11.24).
AK307421 - Homo sapiens cDNA, FLJ97369.
CU677413 - Synthetic construct Homo sapiens gateway clone IMAGE:100017624 5' read MAPK12 mRNA.
AK308768 - Homo sapiens cDNA, FLJ98809.
JD217117 - Sequence 198141 from Patent EP1572962.
JD338039 - Sequence 319063 from Patent EP1572962.
JD227806 - Sequence 208830 from Patent EP1572962.
MA620646 - JP 2018138019-A/192572: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_mapkPathway - MAPKinase Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P53778 (Reactome details) participates in the following event(s):

R-HSA-1247960 Activation of p38 MAPK
R-HSA-448957 Interaction of p38 MAPK with JLP
R-HSA-448955 Phosphorylation of MEF2 proteins by p38
R-HSA-448948 Phosphorylation of E proteins by p38 MAPK
R-HSA-1592233 p38 MAPK phosphorylates PPARGC1A
R-HSA-168638 NOD1/2 Signaling Pathway
R-HSA-375170 CDO in myogenesis
R-HSA-168643 Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
R-HSA-171007 p38MAPK events
R-HSA-376172 DSCAM interactions
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-525793 Myogenesis
R-HSA-2151209 Activation of PPARGC1A (PGC-1alpha) by phosphorylation
R-HSA-168249 Innate Immune System
R-HSA-167044 Signalling to RAS
R-HSA-373752 Netrin-1 signaling
R-HSA-194138 Signaling by VEGF
R-HSA-1266738 Developmental Biology
R-HSA-1592230 Mitochondrial biogenesis
R-HSA-168256 Immune System
R-HSA-187687 Signalling to ERKs
R-HSA-422475 Axon guidance
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-187037 Signaling by NTRK1 (TRKA)
R-HSA-162582 Signal Transduction
R-HSA-166520 Signaling by NTRKs

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000215659.1, ENST00000215659.10, ENST00000215659.11, ENST00000215659.12, ENST00000215659.2, ENST00000215659.3, ENST00000215659.4, ENST00000215659.5, ENST00000215659.6, ENST00000215659.7, ENST00000215659.8, ENST00000215659.9, ERK6, MK12_HUMAN, NM_002969, P53778, Q14260, Q6IC53, Q99588, Q99672, SAPK3, uc317cmk.1, uc317cmk.2
UCSC ID: ENST00000215659.13_7
RefSeq Accession: NM_002969.6
Protein: P53778 (aka MK12_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.