Human Gene IL25 (ENST00000397242.3_7) from GENCODE V47lift37
  Description: Cytokine produced by various cells such as eosinophils, T- helper type 2 (Th2) cells or epithelial cells that plays a role in internal safety of adaptive immune responses by regulating cytokine production (PubMed:25821217, PubMed:15860795). Promotes and augments T- helper type 2 responses locally or systemically (PubMed:25821217). Exerts its activity via its receptor composed of IL17RA and IL17RB for signal transduction (By similarity). In turn, stimulates the JAK2- STAT5A pathway and promotes the secretion of type-2 associated cytokines including IL4, IL9 and IL13 (PubMed:25821217). Induces also the release of IL8, and IL6 from eosinophils through the combined activation of MAPK and NF-kappa-B pathways (PubMed:15860795). Inhibits the differentiation of T-helper (Th17) cells via the production of IL4, IL5 and IL13 (PubMed:11754819). (from UniProt Q9H293)
Gencode Transcript: ENST00000397242.3_7
Gencode Gene: ENSG00000166090.8_12
Transcript (Including UTRs)
   Position: hg19 chr14:23,842,018-23,845,612 Size: 3,595 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr14:23,842,176-23,845,089 Size: 2,914 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:23,842,018-23,845,612)mRNA (may differ from genome)Protein (161 aa)
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-  Comments and Description Text from UniProtKB
  ID: IL25_HUMAN
DESCRIPTION: RecName: Full=Interleukin-25; Short=IL-25; AltName: Full=Interleukin-17E; Short=IL-17E; Flags: Precursor;
FUNCTION: Induces activation of NF-kappa-B and stimulates production of the proinflammatory chemokine IL-8. Proinflammatory cytokine favoring Th2-type immune responses.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Expressed at low levels in several tissues, including brain, kidney, lung, prostate, testis, spinal cord, adrenal gland, and trachea.
SIMILARITY: Belongs to the IL-17 family.
WEB RESOURCE: Name=Wikipedia; Note=Interleukin-17 entry; URL="http://en.wikipedia.org/wiki/Interleukin_17";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.47 RPKM in Testis
Total median expression: 1.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -41.50158-0.263 Picture PostScript Text
3' UTR -172.60523-0.330 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010345 - Interleukin-17

Pfam Domains:
PF06083 - Interleukin-17

SCOP Domains:
57501 - Cystine-knot cytokines

ModBase Predicted Comparative 3D Structure on Q9H293
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005125 cytokine activity
GO:0030380 interleukin-17E receptor binding

Biological Process:
GO:0002437 inflammatory response to antigenic stimulus
GO:0006954 inflammatory response
GO:0008150 biological_process
GO:0009620 response to fungus
GO:0009624 response to nematode
GO:0010469 regulation of receptor activity
GO:0030222 eosinophil differentiation
GO:0032616 interleukin-13 production
GO:0032634 interleukin-5 production
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0097400 interleukin-17-mediated signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space


-  Descriptions from all associated GenBank mRNAs
  HQ448446 - Synthetic construct Homo sapiens clone IMAGE:100071874; CCSB013871_01 interleukin 25 (IL25) gene, encodes complete protein.
KJ899480 - Synthetic construct Homo sapiens clone ccsbBroadEn_08874 IL25 gene, encodes complete protein.
AF461739 - Homo sapiens interleukin 17E (IL17E) mRNA, complete cds.
AF305200 - Homo sapiens interleukin 17E (IL17E) mRNA, complete cds.
AY359127 - Homo sapiens clone DNA147531 IL17E (UNQ3120) mRNA, complete cds.
JD502195 - Sequence 483219 from Patent EP1572962.
JD047246 - Sequence 28270 from Patent EP1572962.
JD325111 - Sequence 306135 from Patent EP1572962.
JD150132 - Sequence 131156 from Patent EP1572962.
JD464167 - Sequence 445191 from Patent EP1572962.
BC104929 - Homo sapiens interleukin 25, mRNA (cDNA clone MGC:132589 IMAGE:8143932), complete cds.
BC104931 - Homo sapiens interleukin 25, mRNA (cDNA clone MGC:132591 IMAGE:8143934), complete cds.
AF458059 - Homo sapiens IL25 mRNA, complete cds.
BC069565 - Homo sapiens interleukin 25, mRNA (cDNA clone MGC:97019 IMAGE:7262228), complete cds.
AB590822 - Synthetic construct DNA, clone: pFN21AE1660, Homo sapiens IL25 gene for interleukin 25, without stop codon, in Flexi system.
EU831823 - Synthetic construct Homo sapiens clone HAIB:100066852; DKFZo008G0721 interleukin 25 protein (IL25) gene, encodes complete protein.
EU831900 - Synthetic construct Homo sapiens clone HAIB:100066929; DKFZo004G0722 interleukin 25 protein (IL25) gene, encodes complete protein.
CU686908 - Synthetic construct Homo sapiens gateway clone IMAGE:100022615 5' read IL25 mRNA.
JD356026 - Sequence 337050 from Patent EP1572962.
JD379018 - Sequence 360042 from Patent EP1572962.
JD101750 - Sequence 82774 from Patent EP1572962.
JD465819 - Sequence 446843 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9H293 (Reactome details) participates in the following event(s):

R-HSA-448424 Interleukin-17 signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000397242.1, ENST00000397242.2, IL17E, IL25_HUMAN, NM_172314, Q2M3F0, Q8IZV3, Q8WXB0, Q9H293, uc318yvv.1, uc318yvv.2, UNQ3120/PRO10272
UCSC ID: ENST00000397242.3_7
Representative RNA: NM_172314
Protein: Q9H293 (aka IL25_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.