Human Gene IL12RB2 (ENST00000674203.2_8) from GENCODE V47lift37
  Description: interleukin 12 receptor subunit beta 2, transcript variant 1 (from RefSeq NM_001559.3)
Gencode Transcript: ENST00000674203.2_8
Gencode Gene: ENSG00000081985.14_16
Transcript (Including UTRs)
   Position: hg19 chr1:67,773,556-67,864,407 Size: 90,852 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr1:67,786,052-67,861,772 Size: 75,721 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:67,773,556-67,864,407)mRNA (may differ from genome)Protein (862 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: I12R2_HUMAN
DESCRIPTION: RecName: Full=Interleukin-12 receptor subunit beta-2; Short=IL-12 receptor subunit beta-2; Short=IL-12R subunit beta-2; Short=IL-12R-beta-2; Short=IL-12RB2; Flags: Precursor;
FUNCTION: Receptor for interleukin-12. This subunit is the signaling component coupling to the JAK2/STAT4 pathway. Promotes the proliferation of T-cells as well as NK cells. Induces the promotion of T-cells towards the Th1 phenotype by strongly enhancing IFN-gamma production.
SUBUNIT: Heterodimer/heterooligomer; disulfide-linked. The functional high affinity IL12 receptor is composed of I12RB1 and IL12RB2. Il12RB2 binds JAK2 (via its N-terminal) through a membrane-proximal region of the cytoplasmic domain. Interaction, in vitro and in vivo, with SOCS3 (via its SH2 domain) inhibits the STAT4-mediated activation. Binds STAT4 through a membrane-distal C-terminal region.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Isoform 2 is expressed at similar levels in both naive and activated T-cells.
DEVELOPMENTAL STAGE: Maximum levels in Th1 cells between day 3 and day 8 of activation.
INDUCTION: In vitro, up-regulated by IFN-alpha.
DOMAIN: The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell- surface receptor binding.
DOMAIN: The box 1 motif is required for JAK interaction and/or activation.
PTM: On IL12 binding, phosphorylated on C-terminal tyrosine residues by JAK2. Phosphorylation on Tyr-800 is required for STAT4 binding and activation, and for SOCS3 binding.
POLYMORPHISM: Heterozygotic variants Gly-313 and Arg-720 are associated with atopy, an immunological condition that can lead to clinical symptoms such as allergic rhinitis, sinusitis, asthma and eczema.
SIMILARITY: Belongs to the type I cytokine receptor family. Type 2 subfamily.
SIMILARITY: Contains 5 fibronectin type-III domains.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il12rb2/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL12RB2
Diseases sorted by gene-association score: sinusitis (19), leprosy (12), mumps (10), lepromatous leprosy (10), atopy (9), crohn's disease (8), smallpox (6), primary biliary cholangitis (5), interleukin-7 receptor alpha deficiency (5), sarcoidosis 1 (2), behcet syndrome (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -72.70219-0.332 Picture PostScript Text
3' UTR -776.402635-0.295 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR003529 - Hematopoietin_rcpt_Gp130_CS
IPR013783 - Ig-like_fold
IPR010457 - IgC2-like_lig-bd
IPR015321 - IL6_recept-bd

Pfam Domains:
PF00041 - Fibronectin type III domain
PF06328 - Ig-like C2-type domain

SCOP Domains:
48726 - Immunoglobulin
49265 - Fibronectin type III

ModBase Predicted Comparative 3D Structure on Q99665
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004896 cytokine receptor activity
GO:0019901 protein kinase binding

Biological Process:
GO:0007166 cell surface receptor signaling pathway
GO:0008284 positive regulation of cell proliferation
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0032496 response to lipopolysaccharide
GO:0032609 interferon-gamma production
GO:0032729 positive regulation of interferon-gamma production
GO:0034097 response to cytokine
GO:0035722 interleukin-12-mediated signaling pathway
GO:0070757 interleukin-35-mediated signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009897 external side of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  U64198 - Human Il-12 receptor beta2 mRNA, complete cds.
AK294494 - Homo sapiens cDNA FLJ59237 complete cds, highly similar to Interleukin-12 receptor beta-2 chain precursor.
AK316525 - Homo sapiens cDNA, FLJ79424 complete cds, highly similar to Interleukin-12 receptor beta-2 chain precursor.
JD396251 - Sequence 377275 from Patent EP1572962.
BC104772 - Homo sapiens interleukin 12 receptor, beta 2, mRNA (cDNA clone MGC:132432 IMAGE:8143775), complete cds.
BC104774 - Homo sapiens interleukin 12 receptor, beta 2, mRNA (cDNA clone MGC:132434 IMAGE:8143777), complete cds.
BC143248 - Homo sapiens cDNA clone IMAGE:9051750.
BC143249 - Homo sapiens interleukin 12 receptor, beta 2, mRNA (cDNA clone MGC:176768 IMAGE:9051751), complete cds.
BC143250 - Homo sapiens cDNA clone IMAGE:9051752.
BC143252 - Homo sapiens cDNA clone IMAGE:9051754, containing frame-shift errors.
JD292085 - Sequence 273109 from Patent EP1572962.
KJ897052 - Synthetic construct Homo sapiens clone ccsbBroadEn_06446 IL12RB2 gene, encodes complete protein.
KR712159 - Synthetic construct Homo sapiens clone CCSBHm_00036318 IL12RB2 (IL12RB2) mRNA, encodes complete protein.
KR712160 - Synthetic construct Homo sapiens clone CCSBHm_00036319 IL12RB2 (IL12RB2) mRNA, encodes complete protein.
AK300020 - Homo sapiens cDNA FLJ50202 complete cds, highly similar to Interleukin-12 receptor beta-2 chain precursor.
AK310837 - Homo sapiens cDNA, FLJ17879.
JD105445 - Sequence 86469 from Patent EP1572962.
JD409528 - Sequence 390552 from Patent EP1572962.
JD526873 - Sequence 507897 from Patent EP1572962.
JD337258 - Sequence 318282 from Patent EP1572962.
JD507488 - Sequence 488512 from Patent EP1572962.
JD052415 - Sequence 33439 from Patent EP1572962.
JD173936 - Sequence 154960 from Patent EP1572962.
JD466921 - Sequence 447945 from Patent EP1572962.
JD420931 - Sequence 401955 from Patent EP1572962.
JD531594 - Sequence 512618 from Patent EP1572962.
JD090856 - Sequence 71880 from Patent EP1572962.
JD303391 - Sequence 284415 from Patent EP1572962.
JD525036 - Sequence 506060 from Patent EP1572962.
JD395745 - Sequence 376769 from Patent EP1572962.
JD217785 - Sequence 198809 from Patent EP1572962.
JD144491 - Sequence 125515 from Patent EP1572962.
AK123656 - Homo sapiens cDNA FLJ41662 fis, clone FEBRA2027082.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_nktPathway - Selective expression of chemokine receptors during T-cell polarization
h_IL12Pathway - IL12 and Stat4 Dependent Signaling Pathway in Th1 Development
h_th1th2Pathway - Th1/Th2 Differentiation
h_no2il12Pathway - NO2-dependent IL 12 Pathway in NK cells

Reactome (by CSHL, EBI, and GO)

Protein Q99665 (Reactome details) participates in the following event(s):

R-NUL-8950050 IL12RB2 binds Jak2
R-HSA-8950063 IL12RB2 binds JAK2
R-HSA-447252 IL12RB1:TYK2 binds IL12RB2:JAK2
R-HSA-447226 Interleukin-12 binds Interleukin-12 receptor
R-HSA-8950128 Interleukin-12 dissociates from Interleukin-12 receptor
R-HSA-8950423 JAK2, TYK2 in IL12A:IL12RB1:TYK2:IL12B:IL12RB2:JAK2 are phosphorylated
R-HSA-8950448 STAT4 binds to IL12RB2 in Interleukin-12 receptor complex
R-HSA-9020591 Interleukin-12 signaling
R-HSA-8984722 Interleukin-35 Signalling
R-HSA-447115 Interleukin-12 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B1AN98, B7ZKL9, ENST00000674203.1, F5H7L6, I12R2_HUMAN, NM_001559, Q2M3V3, Q99665, uc329xyu.1, uc329xyu.2
UCSC ID: ENST00000674203.2_8
RefSeq Accession: NM_001374259.2
Protein: Q99665 (aka I12R2_HUMAN or I12S_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.