Human Gene IL12A (ENST00000699704.1_5) from GENCODE V47lift37
  Description: interleukin 12A, transcript variant 1 (from RefSeq NM_001397992.1)
Gencode Transcript: ENST00000699704.1_5
Gencode Gene: ENSG00000168811.8_12
Transcript (Including UTRs)
   Position: hg19 chr3:159,706,622-159,713,806 Size: 7,185 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr3:159,706,946-159,713,346 Size: 6,401 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:159,706,622-159,713,806)mRNA (may differ from genome)Protein (219 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsHGNC
MalacardsMGIPubMedReactomeUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: IL12A_HUMAN
DESCRIPTION: RecName: Full=Interleukin-12 subunit alpha; Short=IL-12A; AltName: Full=Cytotoxic lymphocyte maturation factor 35 kDa subunit; Short=CLMF p35; AltName: Full=IL-12 subunit p35; AltName: Full=NK cell stimulatory factor chain 1; Short=NKSF1; Flags: Precursor;
FUNCTION: Cytokine that can act as a growth factor for activated T and NK cells, enhance the lytic activity of NK/lymphokine- activated Killer cells, and stimulate the production of IFN-gamma by resting PBMC.
SUBUNIT: Heterodimer with IL12B; disulfide-linked. The heterodimer is known as interleukin IL-12.
INTERACTION: P29460:IL12B; NbExp=2; IntAct=EBI-1029636, EBI-1029614;
SUBCELLULAR LOCATION: Secreted.
INDUCTION: Down-regulated in response to enterovirus 71 (EV71) infection.
SIMILARITY: Belongs to the IL-6 superfamily.
SEQUENCE CAUTION: Sequence=AAA59937.1; Type=Erroneous initiation;
WEB RESOURCE: Name=Wikipedia; Note=Interleukin-12 entry; URL="http://en.wikipedia.org/wiki/Interleukin_12";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il12a/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL12A
Diseases sorted by gene-association score: primary biliary cholangitis* (9), behcet syndrome* (6), atypical autism (6), malaria (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -135.90324-0.419 Picture PostScript Text
3' UTR -88.40460-0.192 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009079 - 4_helix_cytokine-like_core
IPR012351 - 4_helix_cytokine_core
IPR004281 - IL12

Pfam Domains:
PF03039 - Interleukin-12 alpha subunit

SCOP Domains:
47266 - 4-helical cytokines

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1F45 - X-ray MuPIT 3HMX - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P29459
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005125 cytokine activity
GO:0005143 interleukin-12 receptor binding
GO:0005515 protein binding
GO:0008083 growth factor activity
GO:0042163 interleukin-12 beta subunit binding
GO:0045513 interleukin-27 binding
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0001916 positive regulation of T cell mediated cytotoxicity
GO:0002860 positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target
GO:0006955 immune response
GO:0007050 cell cycle arrest
GO:0008283 cell proliferation
GO:0009615 response to virus
GO:0010224 response to UV-B
GO:0010469 regulation of receptor activity
GO:0016477 cell migration
GO:0019221 cytokine-mediated signaling pathway
GO:0032496 response to lipopolysaccharide
GO:0032609 interferon-gamma production
GO:0032700 negative regulation of interleukin-17 production
GO:0032729 positive regulation of interferon-gamma production
GO:0032816 positive regulation of natural killer cell activation
GO:0032946 positive regulation of mononuclear cell proliferation
GO:0034393 positive regulation of smooth muscle cell apoptotic process
GO:0035711 T-helper 1 cell activation
GO:0035722 interleukin-12-mediated signaling pathway
GO:0035744 T-helper 1 cell cytokine production
GO:0042102 positive regulation of T cell proliferation
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein
GO:0042832 defense response to protozoan
GO:0045582 positive regulation of T cell differentiation
GO:0045785 positive regulation of cell adhesion
GO:0045954 positive regulation of natural killer cell mediated cytotoxicity
GO:0048662 negative regulation of smooth muscle cell proliferation
GO:0050671 positive regulation of lymphocyte proliferation
GO:0050830 defense response to Gram-positive bacterium
GO:0051135 positive regulation of NK T cell activation
GO:0070757 interleukin-35-mediated signaling pathway
GO:0071222 cellular response to lipopolysaccharide
GO:0097191 extrinsic apoptotic signaling pathway
GO:0098586 cellular response to virus
GO:2000510 positive regulation of dendritic cell chemotaxis

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005788 endoplasmic reticulum lumen
GO:0009986 cell surface
GO:0031906 late endosome lumen
GO:0043514 interleukin-12 complex


-  Descriptions from all associated GenBank mRNAs
  BC035571 - Homo sapiens interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35), mRNA (cDNA clone IMAGE:5240216), with apparent retained intron.
BC104982 - Homo sapiens interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35), mRNA (cDNA clone MGC:132642 IMAGE:8143985), complete cds.
BC104984 - Homo sapiens interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35), mRNA (cDNA clone MGC:132644 IMAGE:8143987), complete cds.
M65291 - Human natural killer cell stimulatory factor (NKSF) mRNA, complete cds, clone p35.
JD437931 - Sequence 418955 from Patent EP1572962.
M65271 - Human cytotoxic lymphocyte maturation factor 35 kDa subunit mRNA, complete cds.
AF180562 - Homo sapiens interleukin 12, P35 mRNA, complete cds.
AB528728 - Synthetic construct DNA, clone: pF1KB6994, Homo sapiens IL12A gene for interleukin 12A, without stop codon, in Flexi system.
KJ891465 - Synthetic construct Homo sapiens clone ccsbBroadEn_00859 IL12A gene, encodes complete protein.
AF101062 - Homo sapiens interleukin 12 mRNA, complete cds.
JD458712 - Sequence 439736 from Patent EP1572962.
JD167220 - Sequence 148244 from Patent EP1572962.
JD564061 - Sequence 545085 from Patent EP1572962.
JD251473 - Sequence 232497 from Patent EP1572962.
JD233868 - Sequence 214892 from Patent EP1572962.
JD284295 - Sequence 265319 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_th1th2Pathway - Th1/Th2 Differentiation

Reactome (by CSHL, EBI, and GO)

Protein P29459 (Reactome details) participates in the following event(s):

R-HSA-447226 Interleukin-12 binds Interleukin-12 receptor
R-HSA-8950128 Interleukin-12 dissociates from Interleukin-12 receptor
R-HSA-8950347 IL12A:IL12B translocates from late endosome lumen to extracellular region
R-HSA-8950752 IL12A:IL12B translocates from Golgi lumen to late endosome lumen
R-HSA-8950423 JAK2, TYK2 in IL12A:IL12RB1:TYK2:IL12B:IL12RB2:JAK2 are phosphorylated
R-HSA-8950448 STAT4 binds to IL12RB2 in Interleukin-12 receptor complex
R-HSA-9020591 Interleukin-12 signaling
R-HSA-8984722 Interleukin-35 Signalling
R-HSA-6783783 Interleukin-10 signaling
R-HSA-447115 Interleukin-12 family signaling
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: IL12A_HUMAN, NKSF1, NM_001397992, P29459, Q96QZ1, uc331flp.1, uc331flp.2
UCSC ID: ENST00000699704.1_5
RefSeq Accession: NM_001397992.1
Protein: P29459 (aka IL12A_HUMAN or I12A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.