Human Gene IGF2BP2 (ENST00000382199.7_9) from GENCODE V47lift37
  Description: insulin like growth factor 2 mRNA binding protein 2, transcript variant 1 (from RefSeq NM_006548.6)
Gencode Transcript: ENST00000382199.7_9
Gencode Gene: ENSG00000073792.16_12
Transcript (Including UTRs)
   Position: hg19 chr3:185,360,918-185,542,830 Size: 181,913 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chr3:185,363,319-185,542,748 Size: 179,430 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:185,360,918-185,542,830)mRNA (may differ from genome)Protein (599 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IF2B2_HUMAN
DESCRIPTION: RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2; Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName: Full=Hepatocellular carcinoma autoantigen p62; AltName: Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ family member 2;
FUNCTION: Binds to the 5'-UTR of the insulin-like growth factor 2 (IGF2) mRNAs. Binding is isoform-specific. May regulate translation of target mRNAs.
SUBUNIT: Interacts with HNRPD and IGF2BP1.
INTERACTION: Q14103-4:HNRNPD; NbExp=4; IntAct=EBI-1024419, EBI-432545;
SUBCELLULAR LOCATION: Cytoplasm. Note=Localized in cytoplasmic mRNP granules containing untranslated mRNAs. Localizes at the connecting piece and the tail of the spermatozoa.
TISSUE SPECIFICITY: Expressed in oocytes, granulosa cells of small and growing follicles, Leydig cells, spermatogonia and semen (at protein level). Expressed in testicular cancer (at protein level). Expressed weakly in heart, placenta, skeletal muscle, bone marrow, colon, kidney, salivary glands, testis and pancreas. Detected in fetal liver, fetal ovary, gonocytes and interstitial cells of the testis.
DOMAIN: The third and fourth KH domains are important for binding to the untranslated region (UTR) of target mRNA.
MISCELLANEOUS: Autoantibodies against IGF2BP2 are detected in sera from some patients with hepatocellular carcinoma.
SIMILARITY: Belongs to the RRM IMP/VICKZ family.
SIMILARITY: Contains 4 KH domains.
SIMILARITY: Contains 2 RRM (RNA recognition motif) domains.
SEQUENCE CAUTION: Sequence=AAH21290.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IGF2BP2
Diseases sorted by gene-association score: diabetes mellitus, noninsulin-dependent* (121), hepatocellular carcinoma (5), testicular cancer (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.03 RPKM in Cells - Cultured fibroblasts
Total median expression: 164.63 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -28.5082-0.348 Picture PostScript Text
3' UTR -681.822401-0.284 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004087 - KH_dom
IPR004088 - KH_dom_type_1
IPR012677 - Nucleotide-bd_a/b_plait
IPR000504 - RRM_dom

Pfam Domains:
PF00013 - KH domain
PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF13893 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

SCOP Domains:
54791 - Eukaryotic type KH-domain (KH-domain type I)
54814 - Prokaryotic type KH domain (KH-domain type II)
54928 - RNA-binding domain, RBD

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2CQH - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9Y6M1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003730 mRNA 3'-UTR binding
GO:0005515 protein binding
GO:0045182 translation regulator activity
GO:0048027 mRNA 5'-UTR binding

Biological Process:
GO:0006417 regulation of translation
GO:0009653 anatomical structure morphogenesis
GO:0017148 negative regulation of translation
GO:0042035 regulation of cytokine biosynthetic process
GO:0043488 regulation of mRNA stability
GO:0051028 mRNA transport

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  LF210561 - JP 2014500723-A/18064: Polycomb-Associated Non-Coding RNAs.
BC021290 - Homo sapiens insulin-like growth factor 2 mRNA binding protein 2, mRNA (cDNA clone MGC:29539 IMAGE:5090334), complete cds.
AF057352 - Homo sapiens hepatocellular carcinoma autoantigen (p62) mRNA, complete cds.
AK290664 - Homo sapiens cDNA FLJ75263 complete cds, highly similar to Homo sapiens IGF-II mRNA-binding protein 2 (IMP-2), mRNA.
AF117107 - Homo sapiens IGF-II mRNA-binding protein 2 (IMP-2) mRNA, complete cds.
EU408701 - Homo sapiens insulin-like 2 growth factor 2-binding protein 2 (IGF2BP2) mRNA, complete cds, alternatively spliced.
EU408702 - Homo sapiens insulin-like 2 growth factor 2-binding protein 2 (IGF2BP2) mRNA, complete cds, alternatively spliced.
EU408703 - Homo sapiens insulin-like 2 growth factor 2-binding protein 2 (IGF2BP2) mRNA, complete cds, alternatively spliced.
EU408704 - Homo sapiens truncated insulin-like 2 growth factor 2-binding protein 2 (IGF2BP2) mRNA, complete cds, alternatively spliced.
KJ900814 - Synthetic construct Homo sapiens clone ccsbBroadEn_10208 IGF2BP2 gene, encodes complete protein.
DQ892161 - Synthetic construct clone IMAGE:100004791; FLH183579.01X; RZPDo839E03142D insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) gene, encodes complete protein.
EU176689 - Synthetic construct Homo sapiens clone IMAGE:100011464; FLH183578.01L; RZPDo839B04255D insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) gene, encodes complete protein.
AK309611 - Homo sapiens cDNA, FLJ99652.
CU676908 - Synthetic construct Homo sapiens gateway clone IMAGE:100019926 5' read IGF2BP2 mRNA.
MA446138 - JP 2018138019-A/18064: Polycomb-Associated Non-Coding RNAs.
JD081810 - Sequence 62834 from Patent EP1572962.
BX537583 - Homo sapiens mRNA; cDNA DKFZp686I17155 (from clone DKFZp686I17155).
JD229302 - Sequence 210326 from Patent EP1572962.
JD053425 - Sequence 34449 from Patent EP1572962.
JD301666 - Sequence 282690 from Patent EP1572962.
JD071527 - Sequence 52551 from Patent EP1572962.
JD564175 - Sequence 545199 from Patent EP1572962.
JD263118 - Sequence 244142 from Patent EP1572962.
JD290025 - Sequence 271049 from Patent EP1572962.
JD253548 - Sequence 234572 from Patent EP1572962.
JD127087 - Sequence 108111 from Patent EP1572962.
JD390570 - Sequence 371594 from Patent EP1572962.
JD358406 - Sequence 339430 from Patent EP1572962.
JD161770 - Sequence 142794 from Patent EP1572962.
JD153133 - Sequence 134157 from Patent EP1572962.
JD062715 - Sequence 43739 from Patent EP1572962.
AK296703 - Homo sapiens cDNA FLJ53054 complete cds, highly similar to Insulin-like growth factor 2 mRNA-binding protein 2.
JD245873 - Sequence 226897 from Patent EP1572962.
LF338796 - JP 2014500723-A/146299: Polycomb-Associated Non-Coding RNAs.
JD218661 - Sequence 199685 from Patent EP1572962.
JD124587 - Sequence 105611 from Patent EP1572962.
JD124858 - Sequence 105882 from Patent EP1572962.
JD458079 - Sequence 439103 from Patent EP1572962.
JD127960 - Sequence 108984 from Patent EP1572962.
JD455511 - Sequence 436535 from Patent EP1572962.
JD076401 - Sequence 57425 from Patent EP1572962.
LF338797 - JP 2014500723-A/146300: Polycomb-Associated Non-Coding RNAs.
LF338803 - JP 2014500723-A/146306: Polycomb-Associated Non-Coding RNAs.
JD049371 - Sequence 30395 from Patent EP1572962.
LF338804 - JP 2014500723-A/146307: Polycomb-Associated Non-Coding RNAs.
JD508353 - Sequence 489377 from Patent EP1572962.
JD059049 - Sequence 40073 from Patent EP1572962.
LF338806 - JP 2014500723-A/146309: Polycomb-Associated Non-Coding RNAs.
JD025352 - Sequence 6376 from Patent EP1572962.
JD035990 - Sequence 17014 from Patent EP1572962.
LF338807 - JP 2014500723-A/146310: Polycomb-Associated Non-Coding RNAs.
JD035376 - Sequence 16400 from Patent EP1572962.
MA574373 - JP 2018138019-A/146299: Polycomb-Associated Non-Coding RNAs.
MA574374 - JP 2018138019-A/146300: Polycomb-Associated Non-Coding RNAs.
MA574380 - JP 2018138019-A/146306: Polycomb-Associated Non-Coding RNAs.
MA574381 - JP 2018138019-A/146307: Polycomb-Associated Non-Coding RNAs.
MA574383 - JP 2018138019-A/146309: Polycomb-Associated Non-Coding RNAs.
MA574384 - JP 2018138019-A/146310: Polycomb-Associated Non-Coding RNAs.
JD436252 - Sequence 417276 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y6M1 (Reactome details) participates in the following event(s):

R-HSA-428293 IGF2BP2 binds specific RNAs
R-HSA-428359 Insulin-like Growth Factor-2 mRNA Binding Proteins (IGF2BPs/IMPs/VICKZs) bind RNA
R-HSA-8953854 Metabolism of RNA

-  Other Names for This Gene
  Alternate Gene Symbols: A0A4Z0, B3FTN2, B3FTN3, B3FTN4, ENST00000382199.1, ENST00000382199.2, ENST00000382199.3, ENST00000382199.4, ENST00000382199.5, ENST00000382199.6, IF2B2_HUMAN, IMP2, NM_006548, Q9Y6M1, uc318qsd.1, uc318qsd.2, VICKZ2
UCSC ID: ENST00000382199.7_9
RefSeq Accession: NM_006548.6
Protein: Q9Y6M1 (aka IF2B2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.