Human Gene HIBCH (ENST00000359678.10_7) from GENCODE V47lift37
  Description: 3-hydroxyisobutyryl-CoA hydrolase, transcript variant 1 (from RefSeq NM_014362.4)
Gencode Transcript: ENST00000359678.10_7
Gencode Gene: ENSG00000198130.16_14
Transcript (Including UTRs)
   Position: hg19 chr2:191,068,646-191,184,552 Size: 115,907 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr2:191,069,843-191,184,476 Size: 114,634 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:191,068,646-191,184,552)mRNA (may differ from genome)Protein (386 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HIBCH_HUMAN
DESCRIPTION: RecName: Full=3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; EC=3.1.2.4; AltName: Full=3-hydroxyisobutyryl-coenzyme A hydrolase; Short=HIB-CoA hydrolase; Short=HIBYL-CoA-H; Flags: Precursor;
FUNCTION: Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.
CATALYTIC ACTIVITY: 3-hydroxy-2-methylpropanoyl-CoA + H(2)O = CoA + 3-hydroxy-2-methylpropanoate.
PATHWAY: Amino-acid degradation; L-valine degradation.
SUBCELLULAR LOCATION: Mitochondrion (By similarity).
TISSUE SPECIFICITY: Highly expressed in liver and kidney, also detected in heart, muscle and brain (at protein level). Not detected in lung.
DISEASE: Defects in HIBCH are the cause of HIBCH deficiency (HIBCHD) [MIM:250620]; also known as deficiency of beta- hydroxyisobutyryl CoA deacylase or methacrylic aciduria. The enzyme defect results in accumulation of methacrylyl-CoA, a highly reactive compound, which readily undergoes addition reactions with free sulfhydryl groups. Affected individuals showed delayed development of motor skills, hypotonia, initial poor feeding, and a deterioration in neurological function during first stages of life.
SIMILARITY: Belongs to the enoyl-CoA hydratase/isomerase family.
SEQUENCE CAUTION: Sequence=AAC52114.1; Type=Erroneous initiation; Sequence=AAH05190.2; Type=Erroneous initiation; Sequence=AAY24178.1; Type=Erroneous initiation; Sequence=BAD96699.1; Type=Erroneous initiation; Sequence=BAD96743.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HIBCH
Diseases sorted by gene-association score: 3-hydroxyisobutryl-coa hydrolase deficiency* (1680), spinocerebellar ataxia 5 (9), pyruvate dehydrogenase e1-alpha deficiency (9), mitochondrial metabolism disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.29 RPKM in Adrenal Gland
Total median expression: 328.21 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -25.7076-0.338 Picture PostScript Text
3' UTR -256.101197-0.214 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF00378 - Enoyl-CoA hydratase/isomerase
PF16113 - Enoyl-CoA hydratase/isomerase

SCOP Domains:
52096 - ClpP/crotonase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3BPT - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q6NVY1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
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 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006574 valine catabolic process
GO:0009083 branched-chain amino acid catabolic process

Cellular Component:
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix


-  Descriptions from all associated GenBank mRNAs
  KJ902430 - Synthetic construct Homo sapiens clone ccsbBroadEn_11824 HIBCH gene, encodes complete protein.
KR710186 - Synthetic construct Homo sapiens clone CCSBHm_00010271 HIBCH (HIBCH) mRNA, encodes complete protein.
AK222979 - Homo sapiens mRNA for 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 1 variant, clone: HSI04441.
AK223023 - Homo sapiens mRNA for 3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 1 variant, clone: HSI11753.
BC067822 - Homo sapiens 3-hydroxyisobutyryl-Coenzyme A hydrolase, mRNA (cDNA clone MGC:87353 IMAGE:5266813), complete cds.
AK308042 - Homo sapiens cDNA, FLJ97990.
BC005190 - Homo sapiens 3-hydroxyisobutyryl-Coenzyme A hydrolase, mRNA (cDNA clone IMAGE:3685714), partial cds.
U66669 - Homo sapiens 3-hydroxyisobutyryl-coenzyme A hydrolase mRNA, complete cds.
HM005399 - Homo sapiens clone HTL-T-86 testicular tissue protein Li 86 mRNA, complete cds.
AK313651 - Homo sapiens cDNA, FLJ94228.
JD188588 - Sequence 169612 from Patent EP1572962.
JD294747 - Sequence 275771 from Patent EP1572962.
JD022600 - Sequence 3624 from Patent EP1572962.
JD032665 - Sequence 13689 from Patent EP1572962.
AK126890 - Homo sapiens cDNA FLJ44942 fis, clone BRAMY4001173, weakly similar to Homo sapiens 3-hydroxyisobutyryl-Coenzyme A hydrolase (HIBCH).
JD176354 - Sequence 157378 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
VALDEG-PWY - L-valine degradation

Reactome (by CSHL, EBI, and GO)

Protein Q6NVY1 (Reactome details) participates in the following event(s):

R-HSA-70881 beta-hydroxyisobutyryl-CoA + H2O => beta-hydroxyisobutyrate + CoA
R-HSA-70895 Branched-chain amino acid catabolism
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: D3DPI4, ENST00000359678.1, ENST00000359678.2, ENST00000359678.3, ENST00000359678.4, ENST00000359678.5, ENST00000359678.6, ENST00000359678.7, ENST00000359678.8, ENST00000359678.9, HIBCH_HUMAN, NM_014362, Q53GA8, Q53GF2, Q53RF7, Q53TC6, Q6NVY1, Q92931, Q9BS94, uc318bec.1, uc318bec.2
UCSC ID: ENST00000359678.10_7
RefSeq Accession: NM_014362.4
Protein: Q6NVY1 (aka HIBCH_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.