Human Gene GIGYF1 (ENST00000678049.1_4) from GENCODE V47lift37
  Description: GRB10 interacting GYF protein 1, transcript variant 11 (from RefSeq NR_164719.1)
Gencode Transcript: ENST00000678049.1_4
Gencode Gene: ENSG00000146830.11_10
Transcript (Including UTRs)
   Position: hg19 chr7:100,277,130-100,291,873 Size: 14,744 Total Exon Count: 27 Strand: -
Coding Region
   Position: hg19 chr7:100,279,342-100,285,861 Size: 6,520 Coding Exon Count: 24 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:100,277,130-100,291,873)mRNA (may differ from genome)Protein (1035 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PERQ1_HUMAN
DESCRIPTION: RecName: Full=PERQ amino acid-rich with GYF domain-containing protein 1; AltName: Full=GRB10-interacting GYF protein 1;
FUNCTION: May act cooperatively with GRB10 to regulate tyrosine kinase receptor signaling. May increase IGF1 receptor phosphorylation under IGF1 stimulation as well as phosphorylation of IRS1 and SHC1 (By similarity).
SUBUNIT: Interacts with GRB10. This transient binding is increased under IGF1 stimulation and leads to recruitment of GIGYF1/GRB10 complex to IGF1 receptor (By similarity).
DOMAIN: The GYF domain interacts with GRB10 (By similarity).
SIMILARITY: Belongs to the PERQ family.
SIMILARITY: Contains 1 GYF domain.
SEQUENCE CAUTION: Sequence=AAC78792.1; Type=Erroneous gene model prediction; Sequence=AAL55738.1; Type=Frameshift; Positions=784, 856;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -448.501239-0.362 Picture PostScript Text
3' UTR -919.102212-0.416 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003169 - GYF

Pfam Domains:
PF02213 - GYF domain

SCOP Domains:
55277 - GYF domain

ModBase Predicted Comparative 3D Structure on O75420
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details   Gene Details
Gene SorterGene Sorter   Gene Sorter
 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0008150 biological_process
GO:0048009 insulin-like growth factor receptor signaling pathway

Cellular Component:
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  AF088067 - Homo sapiens full length insert cDNA clone ZD87B10.
BC036595 - Homo sapiens PERQ amino acid rich, with GYF domain 1, mRNA (cDNA clone IMAGE:4817543).
AF289554 - Homo sapiens clone pp3360 unknown mRNA.
BC018563 - Homo sapiens GRB10 interacting GYF protein 1, mRNA (cDNA clone IMAGE:4157149).
AY176044 - Homo sapiens Grb10 interacting GYF protein 1 mRNA, complete cds.
AF086157 - Homo sapiens full length insert cDNA clone ZB56H07.
JD206634 - Sequence 187658 from Patent EP1572962.
JD166124 - Sequence 147148 from Patent EP1572962.
JD383035 - Sequence 364059 from Patent EP1572962.
JD391801 - Sequence 372825 from Patent EP1572962.
BC129991 - Homo sapiens GRB10 interacting GYF protein 1, mRNA (cDNA clone IMAGE:40128498), partial cds.
JD196510 - Sequence 177534 from Patent EP1572962.
JD391098 - Sequence 372122 from Patent EP1572962.
JD335957 - Sequence 316981 from Patent EP1572962.
JD173863 - Sequence 154887 from Patent EP1572962.
BC172395 - Synthetic construct Homo sapiens clone IMAGE:100069089, MGC:199100 GRB10 interacting GYF protein 1 (GIGYF1) mRNA, encodes complete protein.
AB527437 - Synthetic construct DNA, clone: pF1KE1027, Homo sapiens GIGYF1 gene for GRB10 interacting GYF protein 1, without stop codon, in Flexi system.
JD189292 - Sequence 170316 from Patent EP1572962.
JD056187 - Sequence 37211 from Patent EP1572962.
DQ597812 - Homo sapiens piRNA piR-35878, complete sequence.
JD126129 - Sequence 107153 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CDS2, GGYF1_HUMAN, NR_164719, O75420, PERQ1, PP3360, Q6Y7W7, Q8WZ38, uc330dmh.1, uc330dmh.2
UCSC ID: ENST00000678049.1_4
RefSeq Accession: NM_001375765.1
Protein: O75420 (aka PERQ1_HUMAN or PERQ_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.