Human Gene FGF19 (ENST00000294312.4_7) from GENCODE V47lift37
  Description: fibroblast growth factor 19 (from RefSeq NM_005117.3)
Gencode Transcript: ENST00000294312.4_7
Gencode Gene: ENSG00000162344.4_9
Transcript (Including UTRs)
   Position: hg19 chr11:69,513,006-69,518,790 Size: 5,785 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr11:69,514,030-69,518,644 Size: 4,615 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:69,513,006-69,518,790)mRNA (may differ from genome)Protein (216 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FGF19_HUMAN
DESCRIPTION: RecName: Full=Fibroblast growth factor 19; Short=FGF-19; Flags: Precursor;
FUNCTION: Involved in the suppression of bile acid biosynthesis through down-regulation of CYP7A1 expression, following positive regulation of the JNK and ERK1/2 cascades. Stimulates glucose uptake in adipocytes. Activity requires the presence of KLB and FGFR4.
SUBUNIT: Interacts with FGFR1, FGFR2, FGFR3 and FGFR4. Affinity between fibroblast growth factors (FGFs) and their receptors is increased by KL, KLB and heparan sulfate glycosaminoglycans that function as coreceptors. Interacts with KL; this interaction is direct. Interacts with KLB; this interaction is direct. Interacts with FGFR4 in the presence of heparin, KL or KLB.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Expressed in fetal brain, cartilage, retina, and adult gall bladder.
INDUCTION: Induced by the bile acids receptor NR1H4 that binds and activates a NR1H4-responsive element within intron 2.
MISCELLANEOUS: Contrarily to other members of the family that can bind several FGF receptors FGF19 is specific for FGFR4.
SIMILARITY: Belongs to the heparin-binding growth factors family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FGF19
Diseases sorted by gene-association score: functional diarrhea (1), in situ pulmonary adenocarcinoma (1), deafness, autosomal recessive 63 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.22 RPKM in Testis
Total median expression: 0.72 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -51.10146-0.350 Picture PostScript Text
3' UTR -304.401024-0.297 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008996 - Cytokine_IL1-like
IPR017338 - Fibroblast_GF_15/19/21
IPR002209 - GF_heparin-bd
IPR002348 - IL1_HBGF

Pfam Domains:
PF00167 - Fibroblast growth factor

SCOP Domains:
50353 - Cytokine
50405 - Actin-crosslinking proteins

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1PWA - X-ray MuPIT 2P23 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O95750
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005088 Ras guanyl-nucleotide exchange factor activity
GO:0005104 fibroblast growth factor receptor binding
GO:0005515 protein binding
GO:0008083 growth factor activity
GO:0016303 1-phosphatidylinositol-3-kinase activity
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity

Biological Process:
GO:0000165 MAPK cascade
GO:0001755 neural crest cell migration
GO:0001934 positive regulation of protein phosphorylation
GO:0007399 nervous system development
GO:0007507 heart development
GO:0008284 positive regulation of cell proliferation
GO:0008543 fibroblast growth factor receptor signaling pathway
GO:0010469 regulation of receptor activity
GO:0010629 negative regulation of gene expression
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process
GO:0046326 positive regulation of glucose import
GO:0046330 positive regulation of JNK cascade
GO:0046854 phosphatidylinositol phosphorylation
GO:0051897 positive regulation of protein kinase B signaling
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0070858 negative regulation of bile acid biosynthetic process

Cellular Component:
GO:0005576 extracellular region
GO:0005622 intracellular


-  Descriptions from all associated GenBank mRNAs
  LF207999 - JP 2014500723-A/15502: Polycomb-Associated Non-Coding RNAs.
BC017664 - Homo sapiens fibroblast growth factor 19, mRNA (cDNA clone MGC:17045 IMAGE:3849343), complete cds.
AF110400 - Homo sapiens fibroblast growth factor 19 (FGF19) mRNA, complete cds.
AY358302 - Homo sapiens clone DNA49435 FGF19 (UNQ334) mRNA, complete cds.
LF370899 - JP 2014500723-A/178402: Polycomb-Associated Non-Coding RNAs.
JD329515 - Sequence 310539 from Patent EP1572962.
JD483631 - Sequence 464655 from Patent EP1572962.
JD559554 - Sequence 540578 from Patent EP1572962.
JD123111 - Sequence 104135 from Patent EP1572962.
LF370897 - JP 2014500723-A/178400: Polycomb-Associated Non-Coding RNAs.
JD137409 - Sequence 118433 from Patent EP1572962.
JD122774 - Sequence 103798 from Patent EP1572962.
JD104285 - Sequence 85309 from Patent EP1572962.
JD376645 - Sequence 357669 from Patent EP1572962.
JD449564 - Sequence 430588 from Patent EP1572962.
LF370895 - JP 2014500723-A/178398: Polycomb-Associated Non-Coding RNAs.
JD400550 - Sequence 381574 from Patent EP1572962.
JD194141 - Sequence 175165 from Patent EP1572962.
JD059266 - Sequence 40290 from Patent EP1572962.
JD293672 - Sequence 274696 from Patent EP1572962.
JD386115 - Sequence 367139 from Patent EP1572962.
JD547905 - Sequence 528929 from Patent EP1572962.
JD248375 - Sequence 229399 from Patent EP1572962.
JD545450 - Sequence 526474 from Patent EP1572962.
AB018122 - Homo sapiens mRNA for FGF-19, complete cds.
BT006729 - Homo sapiens fibroblast growth factor 19 mRNA, complete cds.
JF432499 - Synthetic construct Homo sapiens clone IMAGE:100073720 fibroblast growth factor 19 (FGF19) gene, encodes complete protein.
KJ892883 - Synthetic construct Homo sapiens clone ccsbBroadEn_02277 FGF19 gene, encodes complete protein.
AB590782 - Synthetic construct DNA, clone: pFN21AE1713, Homo sapiens FGF19 gene for fibroblast growth factor 19, without stop codon, in Flexi system.
LF212174 - JP 2014500723-A/19677: Polycomb-Associated Non-Coding RNAs.
LF213112 - JP 2014500723-A/20615: Polycomb-Associated Non-Coding RNAs.
LF370892 - JP 2014500723-A/178395: Polycomb-Associated Non-Coding RNAs.
MA606476 - JP 2018138019-A/178402: Polycomb-Associated Non-Coding RNAs.
MA606474 - JP 2018138019-A/178400: Polycomb-Associated Non-Coding RNAs.
MA606472 - JP 2018138019-A/178398: Polycomb-Associated Non-Coding RNAs.
MA606469 - JP 2018138019-A/178395: Polycomb-Associated Non-Coding RNAs.
MA443576 - JP 2018138019-A/15502: Polycomb-Associated Non-Coding RNAs.
MA447751 - JP 2018138019-A/19677: Polycomb-Associated Non-Coding RNAs.
MA448689 - JP 2018138019-A/20615: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O95750 (Reactome details) participates in the following event(s):

R-HSA-1307955 FGFR4 binds HS:KLB:FGF19
R-HSA-1307963 Autocatalytic phosphorylation of BetaKlotho-bound FGFR4
R-HSA-190265 FGFR4 binds to FGF
R-HSA-5654163 Activated FGFR4 binds PLCG1
R-HSA-5654422 Activated FGFR4 binds FRS2
R-HSA-5654425 Activated FGFR4 binds SHC1
R-HSA-5654651 Activated FGFR4 binds FRS3
R-HSA-5654169 p-4Y-PLCG1 dissociates from activated FGFR4
R-HSA-190326 Autocatalytic phosphorylation of FGFR4
R-HSA-5654151 Activated FGFR4 phosphorylates PLCG1
R-HSA-5654418 Activated FGFR4 phosphorylates FRS2
R-HSA-5654566 Activated ERK1/2 threonine-phosphorylates FGFR4-associated FRS2.
R-HSA-5654659 Activated FGFR4:p-FRS2 binds GRB2:GAB1:PIK3R1
R-HSA-5654653 Activated FGFR4 phosphorylates FRS3
R-HSA-5654428 Activated FGFR4 phosphorylates SHC1
R-HSA-5654423 Activated FGFR4:p-SHC1 binds GRB2:SOS1
R-HSA-5654662 Activated FGFR4:p-FRS2:GRB2:GAB1:PI3KR1 binds PIK3CA
R-HSA-5654667 Activated FGFR4:p-FRS2:p-PPTN11 binds GRB2:GAB1:PI3KR1
R-HSA-5654734 p-CBL:GRB2 binds p-FRS2:activated FGFR4
R-HSA-5654658 Activated FGFR4:p-FRS bind to PPTN11
R-HSA-5654664 Activated FGFR4:p-FRS binds GRB2:SOS1
R-HSA-5654669 Activated FGFR4:p-FRS2:p-PPTN11:GRB2:GAB1:PIK3R1binds PIK3CA
R-HSA-5654684 CBL ubiquitinates FRS2 and FGFR4
R-HSA-5654655 Activated FGFR4 phosphorylates PPTN11
R-HSA-5654426 Activated FGFR4:p-SHC1:GRB2:SOS1 activates RAS nucleotide exchange
R-HSA-5654717 FGFR4-associated PI3K phosphorylates PIP2 to PIP3
R-HSA-5654663 Activated FGFR4:p-FRS2:GRB2:SOS1 activates RAS nucleotide exchange
R-HSA-5672965 RAS GEFs promote RAS nucleotide exchange
R-HSA-2400009 PI3K inhibitors block PI3K catalytic activity
R-HSA-2316434 PI3K phosphorylates PIP2 to PIP3
R-HSA-5654714 FGFR4- and PTPN11-associated PI3K phosphorylates PIP2 to PIP3
R-HSA-109699 PI3K-containing complexes phosphorylate PIP2 to PIP3
R-HSA-1307965 betaKlotho-mediated ligand binding
R-HSA-190322 FGFR4 ligand binding and activation
R-HSA-5654228 Phospholipase C-mediated cascade; FGFR4
R-HSA-5654712 FRS-mediated FGFR4 signaling
R-HSA-5654719 SHC-mediated cascade:FGFR4
R-HSA-5654743 Signaling by FGFR4
R-HSA-5654733 Negative regulation of FGFR4 signaling
R-HSA-5654720 PI-3K cascade:FGFR4
R-HSA-5654716 Downstream signaling of activated FGFR4
R-HSA-190236 Signaling by FGFR
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-162582 Signal Transduction
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-2219530 Constitutive Signaling by Aberrant PI3K in Cancer
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-6811558 PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-109704 PI3K Cascade
R-HSA-2219528 PI3K/AKT Signaling in Cancer
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-199418 Negative regulation of the PI3K/AKT network
R-HSA-5683057 MAPK family signaling cascades
R-HSA-112399 IRS-mediated signalling
R-HSA-5663202 Diseases of signal transduction
R-HSA-74751 Insulin receptor signalling cascade
R-HSA-2428928 IRS-related events triggered by IGF1R
R-HSA-1643685 Disease
R-HSA-74752 Signaling by Insulin receptor
R-HSA-2428924 IGF1R signaling cascade
R-HSA-2404192 Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000294312.1, ENST00000294312.2, ENST00000294312.3, FGF19_HUMAN, NM_005117, O95750, uc317lgo.1, uc317lgo.2, UNQ334/PRO533
UCSC ID: ENST00000294312.4_7
RefSeq Accession: NM_005117.3
Protein: O95750 (aka FGF19_HUMAN or FGFJ_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.