Human Gene EIF4G2 (ENST00000339995.11_12) from GENCODE V47lift37
  Description: eukaryotic translation initiation factor 4 gamma 2, transcript variant 1 (from RefSeq NM_001418.4)
Gencode Transcript: ENST00000339995.11_12
Gencode Gene: ENSG00000110321.19_23
Transcript (Including UTRs)
   Position: hg19 chr11:10,818,601-10,830,473 Size: 11,873 Total Exon Count: 22 Strand: -
Coding Region
   Position: hg19 chr11:10,819,363-10,828,842 Size: 9,480 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:10,818,601-10,830,473)mRNA (may differ from genome)Protein (907 aa)
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-  Comments and Description Text from UniProtKB
  ID: IF4G2_HUMAN
DESCRIPTION: RecName: Full=Eukaryotic translation initiation factor 4 gamma 2; Short=eIF-4-gamma 2; Short=eIF-4G 2; Short=eIF4G 2; AltName: Full=Death-associated protein 5; Short=DAP-5; AltName: Full=p97;
FUNCTION: Appears to play a role in the switch from cap-dependent to IRES-mediated translation during mitosis, apoptosis and viral infection. Cleaved by some caspases and viral proteases.
SUBUNIT: Interacts with the serine/threonine protein kinases MKNK1 and MKNK2. Binds EIF4A and EIF3. Interacts with MIF4GD.
INTERACTION: P60842:EIF4A1; NbExp=2; IntAct=EBI-296519, EBI-73449;
TISSUE SPECIFICITY: Ubiquitously expressed in all adult tissues examined, with high levels in skeletal muscle and heart. Also expressed in fetal brain, lung, liver and kidney.
PTM: Phosphorylation; hyperphosphorylated during mitosis.
MISCELLANEOUS: This gene has been shown to be extensively edited in the liver of APOBEC1 transgenic animal model. Its aberrant editing could contribute to the potent oncogenesis induced by overexpression of APOBEC1. The aberrant edited sequence, called NAT1, is likely to be a fundamental translational repressor.
SIMILARITY: Belongs to the eIF4G family.
SIMILARITY: Contains 1 MI domain.
SIMILARITY: Contains 1 MIF4G domain.
SIMILARITY: Contains 1 W2 domain.
CAUTION: According to PubMed:9049310, this sequence initiates exclusively at a GTG codon.
SEQUENCE CAUTION: Sequence=BAB93515.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAD97268.1; Type=Miscellaneous discrepancy; Note=Unusual initiator. The initiator methionine is coded by a non-canonical GTG valine codon; Sequence=CAA61857.1; Type=Miscellaneous discrepancy; Note=Unusual initiator. The initiator methionine is coded by a non-canonical GTG valine codon;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EIF4G2
Diseases sorted by gene-association score: anterograde amnesia (11), amnestic disorder (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 163.12 RPKM in Cells - Cultured fibroblasts
Total median expression: 5788.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -80.30308-0.261 Picture PostScript Text
3' UTR -170.50762-0.224 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016024 - ARM-type_fold
IPR003891 - Initiation_fac_eIF4g_MI
IPR016021 - MIF4-like_typ_1/2/3
IPR003890 - MIF4G-like_typ-3
IPR003307 - W2_domain

Pfam Domains:
PF02020 - eIF4-gamma/eIF5/eIF2-epsilon
PF02847 - MA3 domain
PF02854 - MIF4G domain

SCOP Domains:
48371 - ARM repeat

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3D3M - X-ray 3L6A - X-ray


ModBase Predicted Comparative 3D Structure on P78344
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0003743 translation initiation factor activity
GO:0005515 protein binding
GO:0008135 translation factor activity, RNA binding
GO:0045296 cadherin binding

Biological Process:
GO:0006412 translation
GO:0006413 translational initiation
GO:0006417 regulation of translation
GO:0006446 regulation of translational initiation
GO:0007050 cell cycle arrest
GO:0008219 cell death
GO:0010507 negative regulation of autophagy
GO:0030307 positive regulation of cell growth
GO:0034645 cellular macromolecule biosynthetic process

Cellular Component:
GO:0005829 cytosol
GO:0005913 cell-cell adherens junction
GO:0016020 membrane
GO:0016281 eukaryotic translation initiation factor 4F complex


-  Descriptions from all associated GenBank mRNAs
  BC065276 - Homo sapiens eukaryotic translation initiation factor 4 gamma, 2, mRNA (cDNA clone MGC:75160 IMAGE:6164568), complete cds.
AB073654 - Homo sapiens primary neuroblastoma cDNA, clone:Nbla00315, full insert sequence.
AB063323 - Homo sapiens mRNA for eukaryotic translation initiation factor 4 gamma 2, complete cds.
BC014930 - Homo sapiens eukaryotic translation initiation factor 4 gamma, 2, mRNA (cDNA clone IMAGE:3919749), partial cds.
X89713 - H.sapiens mRNA for death associated protein 5.
BX647799 - Homo sapiens mRNA; cDNA DKFZp686L178 (from clone DKFZp686L178).
BC018975 - Homo sapiens eukaryotic translation initiation factor 4 gamma, 2, mRNA (cDNA clone MGC:20099 IMAGE:3951907), complete cds.
BC018746 - Homo sapiens eukaryotic translation initiation factor 4 gamma, 2, mRNA (cDNA clone MGC:31927 IMAGE:4299481), complete cds.
BC039851 - Homo sapiens eukaryotic translation initiation factor 4 gamma, 2, mRNA (cDNA clone MGC:48877 IMAGE:6066795), complete cds.
U73824 - Human p97 mRNA, complete cds.
BC043149 - Homo sapiens eukaryotic translation initiation factor 4 gamma, 2, mRNA (cDNA clone MGC:41891 IMAGE:5295212), complete cds.
AK223548 - Homo sapiens mRNA for eukaryotic translation initiation factor 4 gamma, 2 variant, clone: FCC126E04.
AB209267 - Homo sapiens mRNA for eukaryotic translation initiation factor 4 gamma, 2 variant protein.
AY513274 - Homo sapiens aging-associated protein 1 (AAG1) mRNA, complete cds.
U76111 - Human translation repressor NAT1 mRNA, complete cds.
BC111415 - Homo sapiens eukaryotic translation initiation factor 4 gamma, 2, mRNA (cDNA clone MGC:133054 IMAGE:40008735), complete cds.
BC111548 - Homo sapiens eukaryotic translation initiation factor 4 gamma, 2, mRNA (cDNA clone MGC:133053 IMAGE:40008727), complete cds.
JD450659 - Sequence 431683 from Patent EP1572962.
JD299327 - Sequence 280351 from Patent EP1572962.
JD244192 - Sequence 225216 from Patent EP1572962.
JD349449 - Sequence 330473 from Patent EP1572962.
JD348760 - Sequence 329784 from Patent EP1572962.
JD312594 - Sequence 293618 from Patent EP1572962.
JD270014 - Sequence 251038 from Patent EP1572962.
DQ572467 - Homo sapiens piRNA piR-40579, complete sequence.
JD303105 - Sequence 284129 from Patent EP1572962.
AK302886 - Homo sapiens cDNA FLJ59571 complete cds, highly similar to Eukaryotic translation initiation factor 4gamma 2.
AK123338 - Homo sapiens cDNA FLJ41344 fis, clone BRAWH2002318, highly similar to Homo sapiens eukaryotic translation initiation factor 4 gamma, 2 (EIF4G2).
AK310387 - Homo sapiens cDNA, FLJ17429.
AK310738 - Homo sapiens cDNA, FLJ17780.
JD127062 - Sequence 108086 from Patent EP1572962.
JD161287 - Sequence 142311 from Patent EP1572962.
JD486845 - Sequence 467869 from Patent EP1572962.
JD173303 - Sequence 154327 from Patent EP1572962.
JD520858 - Sequence 501882 from Patent EP1572962.
JD520857 - Sequence 501881 from Patent EP1572962.
JD127647 - Sequence 108671 from Patent EP1572962.
JD460652 - Sequence 441676 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_iresPathway - Internal Ribosome entry pathway
h_eifPathway - Eukaryotic protein translation
h_eif4Pathway - Regulation of eIF4e and p70 S6 Kinase
h_mTORPathway - mTOR Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P78344 (Reactome details) participates in the following event(s):

R-HSA-1678842 Competitive inhibition of translation initiation by ISGylated 4EHP
R-HSA-1169408 ISG15 antiviral mechanism
R-HSA-1169410 Antiviral mechanism by IFN-stimulated genes
R-HSA-913531 Interferon Signaling
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: DAP5 , EIF4G2 , ENST00000339995.1, ENST00000339995.10, ENST00000339995.2, ENST00000339995.3, ENST00000339995.4, ENST00000339995.5, ENST00000339995.6, ENST00000339995.7, ENST00000339995.8, ENST00000339995.9, IF4G2_HUMAN, NM_001418, O60877, OK/SW-cl.75, P78344, P78404, Q0VH00, Q0VH01, Q2NKW9, Q49A79, Q53EU1, Q58EZ2, Q8NI71, Q96C16, uc317vnh.1, uc317vnh.2
UCSC ID: ENST00000339995.11_12
RefSeq Accession: NM_001418.4
Protein: P78344 (aka IF4G2_HUMAN or I4G2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.