Human Gene EIF4E (ENST00000450253.7_7) from GENCODE V47lift37
  Description: eukaryotic translation initiation factor 4E, transcript variant 1 (from RefSeq NM_001968.5)
Gencode Transcript: ENST00000450253.7_7
Gencode Gene: ENSG00000151247.13_12
Transcript (Including UTRs)
   Position: hg19 chr4:99,800,427-99,850,284 Size: 49,858 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr4:99,802,179-99,850,263 Size: 48,085 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:99,800,427-99,850,284)mRNA (may differ from genome)Protein (217 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IF4E_HUMAN
DESCRIPTION: RecName: Full=Eukaryotic translation initiation factor 4E; Short=eIF-4E; Short=eIF4E; AltName: Full=eIF-4F 25 kDa subunit; AltName: Full=mRNA cap-binding protein;
FUNCTION: Its translation stimulation activity is repressed by binding to the complex CYFIP1-FMR1 (By similarity). Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates the binding to the mRNA cap.
SUBUNIT: eIF4F is a multi-subunit complex, the composition of which varies with external and internal environmental conditions. It is composed of at least EIF4A, EIF4E and EIF4G1/EIF4G3. EIF4E is also known to interact with other partners. The interaction with EIF4ENIF1 mediates the import into the nucleus. Nonphosphorylated EIF4EBP1, EIF4EBP2 and EIF4EBP3 compete with EIF4G1/EIF4G3 to interact with EIF4E; insulin stimulated MAP- kinase (MAPK1 and MAPK3) phosphorylation of EIF4EBP1 causes dissociation of the complex allowing EIF4G1/EIF4G3 to bind and consequent initiation of translation. Rapamycin can attenuate insulin stimulation, mediated by FKBPs. Interacts mutually exclusive with EIF4A1 or EIF4A2. Interacts with NGDN and PIWIL2. Component of the CYFIP1-EIF4E-FMR1 complex composed of CYFIP, EIF4E and FMR1. Interacts directly with CYFIP1 (By similarity). Interacts with Lassa virus Z protein. Binds to MKNK2 in nucleus. Interacts with LIMD1, WTIP and AJUBA.
INTERACTION: Q13541:EIF4EBP1; NbExp=4; IntAct=EBI-73440, EBI-74090; O60516:EIF4EBP3; NbExp=2; IntAct=EBI-73440, EBI-746950; Q9NRA8:EIF4ENIF1; NbExp=5; IntAct=EBI-73440, EBI-301024; Q04637:EIF4G1; NbExp=2; IntAct=EBI-73440, EBI-73711; Q04743:EMX2; NbExp=4; IntAct=EBI-73440, EBI-399831; Q8TEQ6:GEMIN5; NbExp=3; IntAct=EBI-73440, EBI-443630; Q9BUB5:MKNK1; NbExp=2; IntAct=EBI-73440, EBI-73837;
SUBCELLULAR LOCATION: Cytoplasm, P-body.
PTM: Phosphorylation increases the ability of the protein to bind to mRNA caps and to form the eIF4F complex.
MASS SPECTROMETRY: Mass=24964.3; Method=Electrospray; Range=2-217; Source=PubMed:17036047;
MASS SPECTROMETRY: Mass=24960; Method=Electrospray; Range=2-217; Source=PubMed:17631896;
SIMILARITY: Belongs to the eukaryotic initiation factor 4E family.
CAUTION: Was originally thought to be phosphorylated on Ser-53 (PubMed:3112145); this was later shown to be wrong (PubMed:7665584).

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EIF4E
Diseases sorted by gene-association score: autism 19* (594), pervasive developmental disorder (7), skin squamous cell carcinoma (5), fragile x syndrome (3), squamous cell carcinoma, head and neck (2), breast cancer (2), leukemia, acute myeloid (0)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.39 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 105.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.1021-0.148 Picture PostScript Text
3' UTR -397.701752-0.227 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR023398 - TIF_eIF4e-like_dom
IPR001040 - TIF_eIF_4E
IPR019770 - TIF_eIF_4E_CS

Pfam Domains:
PF01652 - Eukaryotic initiation factor 4E

SCOP Domains:
55418 - eIF4e-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1IPB - X-ray MuPIT 1IPC - X-ray MuPIT 1WKW - X-ray MuPIT 2GPQ - NMR 2V8W - X-ray MuPIT 2V8X - X-ray MuPIT 2V8Y - X-ray MuPIT 2W97 - X-ray MuPIT 3AM7 - X-ray MuPIT 3TF2 - X-ray MuPIT 3U7X - X-ray MuPIT 4AZA - X-ray MuPIT 4DT6 - X-ray MuPIT 4DUM - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P06730
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000339 RNA cap binding
GO:0000340 RNA 7-methylguanosine cap binding
GO:0003723 RNA binding
GO:0003743 translation initiation factor activity
GO:0005515 protein binding
GO:0019899 enzyme binding
GO:0031370 eukaryotic initiation factor 4G binding
GO:0070491 repressing transcription factor binding

Biological Process:
GO:0000082 G1/S transition of mitotic cell cycle
GO:0006405 RNA export from nucleus
GO:0006406 mRNA export from nucleus
GO:0006412 translation
GO:0006413 translational initiation
GO:0006417 regulation of translation
GO:0016032 viral process
GO:0045931 positive regulation of mitotic cell cycle
GO:0010507 negative regulation of autophagy

Cellular Component:
GO:0000932 P-body
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005845 mRNA cap binding complex
GO:0010494 cytoplasmic stress granule
GO:0016281 eukaryotic translation initiation factor 4F complex
GO:0016442 RISC complex
GO:0036464 cytoplasmic ribonucleoprotein granule
GO:0048471 perinuclear region of cytoplasm
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF206351 - JP 2014500723-A/13854: Polycomb-Associated Non-Coding RNAs.
LF353480 - JP 2014500723-A/160983: Polycomb-Associated Non-Coding RNAs.
LF353479 - JP 2014500723-A/160982: Polycomb-Associated Non-Coding RNAs.
M15353 - Homo sapiens cap-binding protein mRNA, complete cds.
JD091409 - Sequence 72433 from Patent EP1572962.
JD066942 - Sequence 47966 from Patent EP1572962.
JD023730 - Sequence 4754 from Patent EP1572962.
JD035511 - Sequence 16535 from Patent EP1572962.
JD303021 - Sequence 284045 from Patent EP1572962.
AJ844638 - Homo sapiens partial mRNA for eukaryotic translation initiation factor 4E (EIF4E gene), 3'UTR.
BC012611 - Homo sapiens eukaryotic translation initiation factor 4E, mRNA (cDNA clone MGC:13631 IMAGE:4282826), complete cds.
BC107715 - Homo sapiens eukaryotic translation initiation factor 4E, mRNA (cDNA clone MGC:111573 IMAGE:6716042), complete cds.
JD206825 - Sequence 187849 from Patent EP1572962.
JD494723 - Sequence 475747 from Patent EP1572962.
JD511027 - Sequence 492051 from Patent EP1572962.
JD091376 - Sequence 72400 from Patent EP1572962.
AK300982 - Homo sapiens cDNA FLJ55157 complete cds, highly similar to Eukaryotic translation initiation factor 4E.
LF353478 - JP 2014500723-A/160981: Polycomb-Associated Non-Coding RNAs.
BC035166 - Homo sapiens eukaryotic translation initiation factor 4E, mRNA (cDNA clone MGC:43316 IMAGE:5265600), complete cds.
BC043226 - Homo sapiens eukaryotic translation initiation factor 4E, mRNA (cDNA clone MGC:44309 IMAGE:5295521), complete cds.
LF353477 - JP 2014500723-A/160980: Polycomb-Associated Non-Coding RNAs.
DQ890728 - Synthetic construct clone IMAGE:100003358; FLH165514.01X; RZPDo839D04160D eukaryotic translation initiation factor 4E (EIF4E) gene, encodes complete protein.
KJ896756 - Synthetic construct Homo sapiens clone ccsbBroadEn_06150 EIF4E gene, encodes complete protein.
DQ893903 - Synthetic construct Homo sapiens clone IMAGE:100008363; FLH165510.01L; RZPDo839D04159D eukaryotic translation initiation factor 4E (EIF4E) gene, encodes complete protein.
KJ534830 - Homo sapiens clone EIF4E_iso-A_adult-A02 eukaryotic translation initiation factor 4E isoform A (EIF4E) mRNA, partial cds, alternatively spliced.
AB528981 - Synthetic construct DNA, clone: pF1KE0907, Homo sapiens EIF4E gene for eukaryotic translation initiation factor 4E, without stop codon, in Flexi system.
LF353476 - JP 2014500723-A/160979: Polycomb-Associated Non-Coding RNAs.
LF353475 - JP 2014500723-A/160978: Polycomb-Associated Non-Coding RNAs.
LF353474 - JP 2014500723-A/160977: Polycomb-Associated Non-Coding RNAs.
AK295083 - Homo sapiens cDNA FLJ58061 complete cds, highly similar to Eukaryotic translation initiation factor 4E.
LF353470 - JP 2014500723-A/160973: Polycomb-Associated Non-Coding RNAs.
MA441928 - JP 2018138019-A/13854: Polycomb-Associated Non-Coding RNAs.
MA589057 - JP 2018138019-A/160983: Polycomb-Associated Non-Coding RNAs.
MA589056 - JP 2018138019-A/160982: Polycomb-Associated Non-Coding RNAs.
MA589055 - JP 2018138019-A/160981: Polycomb-Associated Non-Coding RNAs.
MA589054 - JP 2018138019-A/160980: Polycomb-Associated Non-Coding RNAs.
MA589053 - JP 2018138019-A/160979: Polycomb-Associated Non-Coding RNAs.
MA589052 - JP 2018138019-A/160978: Polycomb-Associated Non-Coding RNAs.
MA589051 - JP 2018138019-A/160977: Polycomb-Associated Non-Coding RNAs.
MA589047 - JP 2018138019-A/160973: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_eifPathway - Eukaryotic protein translation
h_eif4Pathway - Regulation of eIF4e and p70 S6 Kinase
h_iresPathway - Internal Ribosome entry pathway
h_igf1mtorpathway - Skeletal muscle hypertrophy is regulated via AKT/mTOR pathway
h_mTORPathway - mTOR Signaling Pathway
h_SARSpathway - SARS Coronavirus Protease

Reactome (by CSHL, EBI, and GO)

Protein P06730 (Reactome details) participates in the following event(s):

R-HSA-72631 Formation of the cap-binding eIF4F complex
R-HSA-158447 Release of the Mature intronless derived mRNA, TAP, and Aly/Ref from the NPC
R-HSA-158484 Release of the SLBP independent Histone mRNA from the NPC
R-HSA-159050 Release of the Mature intronless transcript derived Histone mRNA:SLBP:eIF4E Complex
R-HSA-72619 eIF2:GTP is hydrolyzed, eIFs are released
R-HSA-72622 Release of eIF4E from the inactive eIF4E:4E-BP complex
R-HSA-165708 Dissociation of phosphorylated 4EBP1 from eIF4E
R-HSA-429955 CCR4-NOT complex deadenylates mRNA
R-HSA-429992 PARN deadenylates mRNA
R-HSA-165692 Phosphorylation of 4E-BP1 by activated mTORC1
R-HSA-72635 eIF4F binds to mRNP
R-HSA-430021 PAN2-PAN3 complex partially deadenylates mRNA
R-HSA-8941312 ZCCHC6, ZCCHC11 are mRNA uridyltransferases
R-HSA-72621 Ribosomal scanning
R-HSA-157849 Formation of translation initiation complexes containing mRNA that does not circularize
R-HSA-72697 Start codon recognition
R-HSA-156823 Association of phospho-L13a with GAIT element of Ceruloplasmin mRNA
R-HSA-156808 Formation of translation initiation complexes yielding circularized Ceruloplasmin mRNA in a 'closed-loop' conformation
R-HSA-1678842 Competitive inhibition of translation initiation by ISGylated 4EHP
R-HSA-72662 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
R-HSA-159231 Transport of Mature mRNA Derived from an Intronless Transcript
R-HSA-159227 Transport of the SLBP independent Mature mRNA
R-HSA-159230 Transport of the SLBP Dependant Mature mRNA
R-HSA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-HSA-166208 mTORC1-mediated signalling
R-HSA-429947 Deadenylation of mRNA
R-HSA-72737 Cap-dependent Translation Initiation
R-HSA-159234 Transport of Mature mRNAs Derived from Intronless Transcripts
R-HSA-165159 mTOR signalling
R-HSA-429914 Deadenylation-dependent mRNA decay
R-HSA-72702 Ribosomal scanning and start codon recognition
R-HSA-72649 Translation initiation complex formation
R-HSA-156827 L13a-mediated translation
R-HSA-1169408 ISG15 antiviral mechanism
R-HSA-72613 Eukaryotic Translation Initiation
R-HSA-72202 Transport of Mature Transcript to Cytoplasm
R-HSA-162582 Signal Transduction
R-HSA-8953854 Metabolism of RNA
R-HSA-1169410 Antiviral mechanism by IFN-stimulated genes
R-HSA-72766 Translation
R-HSA-72203 Processing of Capped Intron-Containing Pre-mRNA
R-HSA-913531 Interferon Signaling
R-HSA-392499 Metabolism of proteins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z6V1, D6RCQ6, EIF4E , EIF4EL1, EIF4F, ENST00000450253.1, ENST00000450253.2, ENST00000450253.3, ENST00000450253.4, ENST00000450253.5, ENST00000450253.6, IF4E_HUMAN, NM_001968, P06730, Q96E95, uc320rrw.1, uc320rrw.2
UCSC ID: ENST00000450253.7_7
RefSeq Accession: NM_001968.5
Protein: P06730 (aka IF4E_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.