Human Gene CGB7 (ENST00000684222.1_3) from GENCODE V47lift37
  Description: chorionic gonadotropin subunit beta 7, transcript variant 1 (from RefSeq NM_001385261.1)
Gencode Transcript: ENST00000684222.1_3
Gencode Gene: ENSG00000196337.14_13
Transcript (Including UTRs)
   Position: hg19 chr19:49,557,531-49,561,006 Size: 3,476 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr19:49,557,548-49,558,632 Size: 1,085 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersMalaCardsGene AllelesMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:49,557,531-49,561,006)mRNA (may differ from genome)Protein (165 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CGB7
Diseases sorted by gene-association score: trisomy 22 (7), choriocarcinoma (5), ectopic pregnancy (4), down syndrome (4), seminoma (4), nonseminomatous germ cell tumor (4), sacrococcygeal teratoma (4), triploidy (4), ulcerative stomatitis (2), mixed ductal-endocrine carcinoma (1)

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -731.001636-0.447 Picture PostScript Text
3' UTR 0.00170.000 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  LF207669 - JP 2014500723-A/15172: Polycomb-Associated Non-Coding RNAs.
LF367814 - JP 2014500723-A/175317: Polycomb-Associated Non-Coding RNAs.
MA603391 - JP 2018138019-A/175317: Polycomb-Associated Non-Coding RNAs.
MA443246 - JP 2018138019-A/15172: Polycomb-Associated Non-Coding RNAs.
BC041054 - Homo sapiens chorionic gonadotropin, beta polypeptide, mRNA (cDNA clone MGC:52151 IMAGE:5431911), complete cds.
AK092722 - Homo sapiens cDNA FLJ35403 fis, clone SKNSH2006432, highly similar to CHORIOGONADOTROPIN BETA CHAIN PRECURSOR.
AK125108 - Homo sapiens cDNA FLJ43118 fis, clone CTONG3002909, highly similar to CHORIOGONADOTROPIN BETA CHAIN PRECURSOR.
JD139374 - Sequence 120398 from Patent EP1572962.
BC160150 - Synthetic construct Homo sapiens clone IMAGE:100064182, MGC:193265 chorionic gonadotropin, beta polypeptide 7 (CGB7) mRNA, encodes complete protein.
JD417096 - Sequence 398120 from Patent EP1572962.
JD177996 - Sequence 159020 from Patent EP1572962.
JD151624 - Sequence 132648 from Patent EP1572962.
JD055409 - Sequence 36433 from Patent EP1572962.
JD385646 - Sequence 366670 from Patent EP1572962.
AK297906 - Homo sapiens cDNA FLJ60732 complete cds.
AK310581 - Homo sapiens cDNA, FLJ17623.

-  Other Names for This Gene
  Alternate Gene Symbols: A1A5E0, B9ZVP5, CGB7 , CGB7_HUMAN, NM_001385261, P01233, P0DN87, Q13991, Q14000, Q3KPI3, Q3SY41, Q8WTT5, Q8WXL1, Q8WXL2, Q8WXL3, Q8WXL4, uc330moc.1, uc330moc.2
UCSC ID: ENST00000684222.1_3
RefSeq Accession: NM_001385261.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.