Human Gene CCT8 (ENST00000286788.9_7) from GENCODE V47lift37
  Description: chaperonin containing TCP1 subunit 8, transcript variant 1 (from RefSeq NM_006585.4)
Gencode Transcript: ENST00000286788.9_7
Gencode Gene: ENSG00000156261.13_12
Transcript (Including UTRs)
   Position: hg19 chr21:30,428,647-30,445,969 Size: 17,323 Total Exon Count: 15 Strand: -
Coding Region
   Position: hg19 chr21:30,428,796-30,445,911 Size: 17,116 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:30,428,647-30,445,969)mRNA (may differ from genome)Protein (548 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TCPQ_HUMAN
DESCRIPTION: RecName: Full=T-complex protein 1 subunit theta; Short=TCP-1-theta; AltName: Full=CCT-theta; AltName: Full=Renal carcinoma antigen NY-REN-15;
FUNCTION: Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.
SUBUNIT: Heterooligomeric complex of about 850 to 900 kDa that forms two stacked rings, 12 to 16 nm in diameter. Interacts with PACRG. Component of the BBS/CCT complex composed at least of MKKS, BBS10, BBS12, TCP1, CCT2, CCT3, CCT4, CCT5 AND CCT8.
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton, centrosome.
SIMILARITY: Belongs to the TCP-1 chaperonin family.
SEQUENCE CAUTION: Sequence=BAA02792.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 152.00 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 2009.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -15.8058-0.272 Picture PostScript Text
3' UTR -23.90149-0.160 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR012721 - Chap_CCT_theta
IPR017998 - Chaperone_TCP-1
IPR002194 - Chaperonin_TCP-1_CS
IPR002423 - Cpn60/TCP-1

Pfam Domains:
PF00118 - TCP-1/cpn60 chaperonin family

SCOP Domains:
48592 - GroEL equatorial domain-like
52029 - GroEL apical domain-like
54849 - GroEL-intermediate domain like

ModBase Predicted Comparative 3D Structure on P50990
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0042623 ATPase activity, coupled
GO:0044183 protein binding involved in protein folding
GO:0045296 cadherin binding
GO:0051082 unfolded protein binding

Biological Process:
GO:0006457 protein folding
GO:0006458 'de novo' protein folding
GO:0007339 binding of sperm to zona pellucida
GO:0032212 positive regulation of telomere maintenance via telomerase
GO:0043312 neutrophil degranulation
GO:0046931 pore complex assembly
GO:0050821 protein stabilization
GO:0061077 chaperone-mediated protein folding
GO:1901998 toxin transport
GO:1904851 positive regulation of establishment of protein localization to telomere
GO:1904871 positive regulation of protein localization to Cajal body
GO:1904874 positive regulation of telomerase RNA localization to Cajal body

Cellular Component:
GO:0002199 zona pellucida receptor complex
GO:0005576 extracellular region
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005832 chaperonin-containing T-complex
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005929 cilium
GO:0034774 secretory granule lumen
GO:0035578 azurophil granule lumen
GO:0042995 cell projection
GO:0044297 cell body
GO:0045111 intermediate filament cytoskeleton
GO:0070062 extracellular exosome
GO:1904813 ficolin-1-rich granule lumen


-  Descriptions from all associated GenBank mRNAs
  LF210654 - JP 2014500723-A/18157: Polycomb-Associated Non-Coding RNAs.
BC035472 - Homo sapiens chaperonin containing TCP1, subunit 8 (theta), mRNA (cDNA clone IMAGE:3918102).
AK222490 - Homo sapiens mRNA for chaperonin containing TCP1, subunit 8 (theta) variant, clone: adKA03147.
BC012584 - Homo sapiens chaperonin containing TCP1, subunit 8 (theta), mRNA (cDNA clone MGC:13491 IMAGE:4133182), complete cds.
BC095470 - Homo sapiens chaperonin containing TCP1, subunit 8 (theta), mRNA (cDNA clone MGC:111375 IMAGE:30523886), complete cds.
BC072001 - Homo sapiens chaperonin containing TCP1, subunit 8 (theta), mRNA (cDNA clone MGC:88704 IMAGE:6298609), complete cds.
AK293705 - Homo sapiens cDNA FLJ53379 complete cds, highly similar to T-complex protein 1 subunit theta.
D13627 - Homo sapiens KIAA0002 mRNA.
AK308063 - Homo sapiens cDNA, FLJ98011.
AK298801 - Homo sapiens cDNA FLJ59382 complete cds, highly similar to T-complex protein 1 subunit theta.
LF339804 - JP 2014500723-A/147307: Polycomb-Associated Non-Coding RNAs.
AB590043 - Synthetic construct DNA, clone: pFN21AA0002, Homo sapiens CCT8 gene for chaperonin containing TCP1, subunit 8, without stop codon, in Flexi system.
LF339805 - JP 2014500723-A/147308: Polycomb-Associated Non-Coding RNAs.
LF339807 - JP 2014500723-A/147310: Polycomb-Associated Non-Coding RNAs.
LF339808 - JP 2014500723-A/147311: Polycomb-Associated Non-Coding RNAs.
LF339809 - JP 2014500723-A/147312: Polycomb-Associated Non-Coding RNAs.
LF339810 - JP 2014500723-A/147313: Polycomb-Associated Non-Coding RNAs.
LF339811 - JP 2014500723-A/147314: Polycomb-Associated Non-Coding RNAs.
LF339813 - JP 2014500723-A/147316: Polycomb-Associated Non-Coding RNAs.
LF339816 - JP 2014500723-A/147319: Polycomb-Associated Non-Coding RNAs.
LF339817 - JP 2014500723-A/147320: Polycomb-Associated Non-Coding RNAs.
LF339819 - JP 2014500723-A/147322: Polycomb-Associated Non-Coding RNAs.
LF339820 - JP 2014500723-A/147323: Polycomb-Associated Non-Coding RNAs.
LF339821 - JP 2014500723-A/147324: Polycomb-Associated Non-Coding RNAs.
LF339822 - JP 2014500723-A/147325: Polycomb-Associated Non-Coding RNAs.
Z37163 - H.sapiens mRNA for homologue of the mouse Cctq gene.
BC005220 - Homo sapiens chaperonin containing TCP1, subunit 8 (theta), mRNA (cDNA clone IMAGE:3930332).
MA446231 - JP 2018138019-A/18157: Polycomb-Associated Non-Coding RNAs.
MA575381 - JP 2018138019-A/147307: Polycomb-Associated Non-Coding RNAs.
MA575382 - JP 2018138019-A/147308: Polycomb-Associated Non-Coding RNAs.
MA575384 - JP 2018138019-A/147310: Polycomb-Associated Non-Coding RNAs.
MA575385 - JP 2018138019-A/147311: Polycomb-Associated Non-Coding RNAs.
MA575386 - JP 2018138019-A/147312: Polycomb-Associated Non-Coding RNAs.
MA575387 - JP 2018138019-A/147313: Polycomb-Associated Non-Coding RNAs.
MA575388 - JP 2018138019-A/147314: Polycomb-Associated Non-Coding RNAs.
MA575390 - JP 2018138019-A/147316: Polycomb-Associated Non-Coding RNAs.
MA575393 - JP 2018138019-A/147319: Polycomb-Associated Non-Coding RNAs.
MA575394 - JP 2018138019-A/147320: Polycomb-Associated Non-Coding RNAs.
MA575396 - JP 2018138019-A/147322: Polycomb-Associated Non-Coding RNAs.
MA575397 - JP 2018138019-A/147323: Polycomb-Associated Non-Coding RNAs.
MA575398 - JP 2018138019-A/147324: Polycomb-Associated Non-Coding RNAs.
MA575399 - JP 2018138019-A/147325: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P50990 (Reactome details) participates in the following event(s):

R-HSA-389954 Hydrolysis of ATP and release of tubulin folding intermediate from CCT/TriC
R-HSA-389961 ADP is exchanged for ATP in the (ADP:CCT/TriC):tubulin complex
R-HSA-389970 Actin/tubulin:prefoldin complex associates with CCT/TriC
R-HSA-390470 Association of CCT/TriC with other substrates during biosynthesis (unknown chaperone)
R-HSA-391266 Association of CCT/TriC with sphingosine kinase 1
R-HSA-6814119 TRiC/CCT binds unfolded G-protein beta subunit
R-HSA-390453 Hydrolysis of ATP and release of folded actin from CCT/TriC
R-HSA-8850527 PDCL releases folded G-beta from TRiC/CCT
R-HSA-8850539 Release of GNB5:RGS dimers from CCT/TRiC
R-HSA-6798751 Exocytosis of azurophil granule lumen proteins
R-HSA-6800434 Exocytosis of ficolin-rich granule lumen proteins
R-HSA-6798748 Exocytosis of secretory granule lumen proteins
R-HSA-390459 Exchange of ADP for ATP in CCT/TriC:actin complex
R-HSA-6814124 ATP binds G-protein beta associated TRiC/CCT
R-HSA-8850529 RGS proteins bind GNB5 and CCT/TRiC
R-HSA-8850534 PDCL promotes G-protein beta 5 folding
R-HSA-6814121 PDCL binds G-protein beta and TRiC/CCT
R-HSA-6814120 ATP hydrolysis promotes folding of G-protein beta by TRiC/CCT
R-HSA-389960 Formation of tubulin folding intermediates by CCT/TriC
R-HSA-389957 Prefoldin mediated transfer of substrate to CCT/TriC
R-HSA-390471 Association of TriC/CCT with target proteins during biosynthesis
R-HSA-6814122 Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding
R-HSA-390450 Folding of actin by CCT/TriC
R-HSA-6798695 Neutrophil degranulation
R-HSA-389958 Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding
R-HSA-390466 Chaperonin-mediated protein folding
R-HSA-168249 Innate Immune System
R-HSA-391251 Protein folding
R-HSA-168256 Immune System
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A6NN54, B4DEM7, B4DQH4, C21orf112, CCTQ, ENST00000286788.1, ENST00000286788.2, ENST00000286788.3, ENST00000286788.4, ENST00000286788.5, ENST00000286788.6, ENST00000286788.7, ENST00000286788.8, KIAA0002, NM_006585, P50990, Q4VBP8, TCPQ_HUMAN, uc317klg.1, uc317klg.2
UCSC ID: ENST00000286788.9_7
RefSeq Accession: NM_006585.4
Protein: P50990 (aka TCPQ_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.