Human Gene CCNB1 (ENST00000256442.10_4) from GENCODE V47lift37
  Description: cyclin B1, transcript variant 1 (from RefSeq NM_031966.4)
Gencode Transcript: ENST00000256442.10_4
Gencode Gene: ENSG00000134057.15_11
Transcript (Including UTRs)
   Position: hg19 chr5:68,462,977-68,474,072 Size: 11,096 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr5:68,463,090-68,473,458 Size: 10,369 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:68,462,977-68,474,072)mRNA (may differ from genome)Protein (433 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CCNB1_HUMAN
DESCRIPTION: RecName: Full=G2/mitotic-specific cyclin-B1;
FUNCTION: Essential for the control of the cell cycle at the G2/M (mitosis) transition.
SUBUNIT: Interacts with the CDC2 protein kinase to form a serine/threonine kinase holoenzyme complex also known as maturation promoting factor (MPF). The cyclin subunit imparts substrate specificity to the complex. Binds HEI10. Interacts with catalytically active RALBP1 and CDC2 during mitosis to form an endocytotic complex during interphase. Interacts with CCNF; interaction is required for nuclear localization.
INTERACTION: Q9NPC3:CCNB1IP1; NbExp=2; IntAct=EBI-495332, EBI-745269; P06493:CDK1; NbExp=4; IntAct=EBI-495332, EBI-444308; Q99640:PKMYT1; NbExp=2; IntAct=EBI-495332, EBI-495308; Q96PU4:UHRF2; NbExp=2; IntAct=EBI-495332, EBI-625304;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Cytoplasm, cytoskeleton, centrosome.
DEVELOPMENTAL STAGE: Accumulates steadily during G2 and is abruptly destroyed at mitosis.
PTM: Ubiquitinated by the SCF(NIPA) complex during interphase, leading to its destruction. Not ubiquitinated during G2/M phases.
PTM: Phosphorylated by PLK1 at Ser-133 on centrosomes during prophase: phosphorylation by PLK1 does not cause nuclear import. Phosphorylation at Ser-147 was also reported to be mediated by PLK1 but Ser-133 seems to be the primary phosphorylation site.
SIMILARITY: Belongs to the cyclin family. Cyclin AB subfamily.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/CCNB1ID951ch5q13.html";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/ccnb1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CCNB1
Diseases sorted by gene-association score: thyroid lymphoma (12), adrenal carcinoma (10), cervical cancer, somatic (6), breast cancer (4), nasopharyngeal carcinoma (4), colorectal cancer (3), lung cancer (3), hepatocellular carcinoma (2), prostate cancer (2), esophageal cancer (2), urinary bladder cancer (2), osteosarcoma, somatic (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 49.92 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 183.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -37.90113-0.335 Picture PostScript Text
3' UTR -130.90614-0.213 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013763 - Cyclin-like
IPR014400 - Cyclin_A/B/D/E
IPR004367 - Cyclin_C
IPR006671 - Cyclin_N

Pfam Domains:
PF00134 - Cyclin, N-terminal domain
PF02984 - Cyclin, C-terminal domain

SCOP Domains:
47954 - Cyclin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2B9R - X-ray MuPIT 2JGZ - X-ray


ModBase Predicted Comparative 3D Structure on P14635
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004693 cyclin-dependent protein serine/threonine kinase activity
GO:0005113 patched binding
GO:0005515 protein binding
GO:0016301 kinase activity
GO:0019901 protein kinase binding
GO:0035173 histone kinase activity
GO:0044389 ubiquitin-like protein ligase binding
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0000278 mitotic cell cycle
GO:0001556 oocyte maturation
GO:0001701 in utero embryonic development
GO:0001933 negative regulation of protein phosphorylation
GO:0006468 protein phosphorylation
GO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007049 cell cycle
GO:0007052 mitotic spindle organization
GO:0007077 mitotic nuclear envelope disassembly
GO:0007080 mitotic metaphase plate congression
GO:0007283 spermatogenesis
GO:0009612 response to mechanical stimulus
GO:0009636 response to toxic substance
GO:0010629 negative regulation of gene expression
GO:0010971 positive regulation of G2/M transition of mitotic cell cycle
GO:0031145 anaphase-promoting complex-dependent catabolic process
GO:0031442 positive regulation of mRNA 3'-end processing
GO:0033129 positive regulation of histone phosphorylation
GO:0042246 tissue regeneration
GO:0042493 response to drug
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045787 positive regulation of cell cycle
GO:0045931 positive regulation of mitotic cell cycle
GO:0046680 response to DDT
GO:0048146 positive regulation of fibroblast proliferation
GO:0048565 digestive tract development
GO:0051301 cell division
GO:0051726 regulation of cell cycle
GO:0051987 positive regulation of attachment of spindle microtubules to kinetochore
GO:0055015 ventricular cardiac muscle cell development
GO:0060045 positive regulation of cardiac muscle cell proliferation
GO:0060623 regulation of chromosome condensation
GO:0065003 macromolecular complex assembly
GO:0071283 cellular response to iron(III) ion
GO:0071398 cellular response to fatty acid
GO:0071407 cellular response to organic cyclic compound
GO:0071456 cellular response to hypoxia
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint
GO:1905448 positive regulation of mitochondrial ATP synthesis coupled electron transport
GO:2000775 histone H3-S10 phosphorylation involved in chromosome condensation

Cellular Component:
GO:0000922 spindle pole
GO:0000942 condensed nuclear chromosome outer kinetochore
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005759 mitochondrial matrix
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0016020 membrane
GO:0097125 cyclin B1-CDK1 complex


-  Descriptions from all associated GenBank mRNAs
  LF209886 - JP 2014500723-A/17389: Polycomb-Associated Non-Coding RNAs.
AK289431 - Homo sapiens cDNA FLJ75563 complete cds, highly similar to Homo sapiens cyclin B1 (CCNB1), mRNA.
BC006510 - Homo sapiens cyclin B1, mRNA (cDNA clone MGC:2548 IMAGE:2963100), complete cds.
JD428538 - Sequence 409562 from Patent EP1572962.
LF332450 - JP 2014500723-A/139953: Polycomb-Associated Non-Coding RNAs.
M25753 - Human cyclin B mRNA, 3' end.
JD424254 - Sequence 405278 from Patent EP1572962.
JD280768 - Sequence 261792 from Patent EP1572962.
JD525478 - Sequence 506502 from Patent EP1572962.
JD389954 - Sequence 370978 from Patent EP1572962.
JD199350 - Sequence 180374 from Patent EP1572962.
AB590575 - Synthetic construct DNA, clone: pFN21AE2239, Homo sapiens CCNB1 gene for cyclin B1, without stop codon, in Flexi system.
DQ892975 - Synthetic construct clone IMAGE:100005605; FLH191329.01X; RZPDo839C0177D cyclin B1 (CCNB1) gene, encodes complete protein.
BT020128 - Homo sapiens cyclin B1 mRNA, complete cds.
AM851053 - Homo sapiens mRNA for cyclin B1 (CCNB1V gene), short variant.
MA264866 - JP 2017508467-A/186: PHARMACEUTICAL COMPOSITIONS COMPRISING RNA AND USE FOR TREATING CANCER.
MS942542 - Sequence 186 from Patent EP3116513.
LF332447 - JP 2014500723-A/139950: Polycomb-Associated Non-Coding RNAs.
LF332446 - JP 2014500723-A/139949: Polycomb-Associated Non-Coding RNAs.
MA264868 - JP 2017508467-A/188: PHARMACEUTICAL COMPOSITIONS COMPRISING RNA AND USE FOR TREATING CANCER.
MS942544 - Sequence 188 from Patent EP3116513.
LF332445 - JP 2014500723-A/139948: Polycomb-Associated Non-Coding RNAs.
MA264870 - JP 2017508467-A/190: PHARMACEUTICAL COMPOSITIONS COMPRISING RNA AND USE FOR TREATING CANCER.
MS942546 - Sequence 190 from Patent EP3116513.
AY027761 - Homo sapiens MS6.1 cyclin B1 mRNA, partial cds.
AY027762 - Homo sapiens MS6.2 cyclin B1 mRNA, partial cds.
AY027763 - Homo sapiens MS6.3 cyclin B1 mRNA, partial cds.
AY027765 - Homo sapiens MS6.5 cyclin B1 mRNA, partial cds.
AY027766 - Homo sapiens clone MS6.6 nonfunctional cyclin B1 mRNA, partial cds.
AY027767 - Homo sapiens MS6.7 cyclin B1 mRNA, partial cds.
AY027768 - Homo sapiens MS6.9 cyclin B1 mRNA, partial cds.
AY027769 - Homo sapiens MS6.10 cyclin B1 mRNA, partial cds.
AY027770 - Homo sapiens 3.1 cyclin B1 mRNA, partial cds.
AY027764 - Homo sapiens MS6.4 cyclin B1 mRNA, partial cds.
LF332443 - JP 2014500723-A/139946: Polycomb-Associated Non-Coding RNAs.
LF332442 - JP 2014500723-A/139945: Polycomb-Associated Non-Coding RNAs.
DM110833 - Novel Cancer Marker and Use Thereof.
MA264872 - JP 2017508467-A/192: PHARMACEUTICAL COMPOSITIONS COMPRISING RNA AND USE FOR TREATING CANCER.
MS942548 - Sequence 192 from Patent EP3116513.
LF332441 - JP 2014500723-A/139944: Polycomb-Associated Non-Coding RNAs.
MA568027 - JP 2018138019-A/139953: Polycomb-Associated Non-Coding RNAs.
MA568024 - JP 2018138019-A/139950: Polycomb-Associated Non-Coding RNAs.
MA568023 - JP 2018138019-A/139949: Polycomb-Associated Non-Coding RNAs.
MA568022 - JP 2018138019-A/139948: Polycomb-Associated Non-Coding RNAs.
MA568020 - JP 2018138019-A/139946: Polycomb-Associated Non-Coding RNAs.
MA568019 - JP 2018138019-A/139945: Polycomb-Associated Non-Coding RNAs.
MA568018 - JP 2018138019-A/139944: Polycomb-Associated Non-Coding RNAs.
MA445463 - JP 2018138019-A/17389: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_ptc1Pathway - Sonic Hedgehog (SHH) Receptor Ptc1 Regulates cell cycle
h_EfpPathway - Estrogen-responsive protein Efp controls cell cycle and breast tumors growth
h_g2Pathway - Cell Cycle: G2/M Checkpoint
h_srcRPTPPathway - Activation of Src by Protein-tyrosine phosphatase alpha
h_akap95Pathway - AKAP95 role in mitosis and chromosome dynamics
h_cellcyclePathway - Cyclins and Cell Cycle Regulation
h_mPRPathway - How Progesterone Initiates the Oocyte Maturation
h_stathminPathway - Stathmin and breast cancer resistance to antimicrotubule agents

Reactome (by CSHL, EBI, and GO)

Protein P14635 (Reactome details) participates in the following event(s):

R-HSA-113638 Association of Cyclin B/Cdk1 with replicative origin inhibits pre-RC formation
R-HSA-170076 CAK-mediated phosphorylation of Cyclin B1:Cdc2 complexes
R-HSA-170072 Translocation of Cyclin B1:phospho-Cdc2 to the cytoplasm
R-HSA-170153 Dephosphorylation of nuclear Cyclin B1:phospho-Cdc2 (Thr 14, Tyr15) complexes by Cdc25 phosphatases
R-HSA-170070 Wee1-mediated phosphorylation of Cyclin B1:phospho-Cdc2 complexes
R-HSA-170126 Phosphorylation of Cyclin B1 in the CRS domain
R-HSA-174120 Association of Cyclin B:Cdc2 with Cdc20:APC/C complex
R-HSA-6803875 SFN dimer binds CDK1 and CCNB1
R-HSA-170057 Formation of Cyclin B:Cdc2 complexes
R-HSA-170131 Translocation of CRS phosphorylated Cyclin B1:Cdc2 complexes
R-HSA-170044 Translocation of Cyclin B1:phospho-Cdc2 complexes to the nucleus
R-HSA-174122 Phosphorylation of the Emi1 DSGxxS degron by Cyclin B:Cdc2
R-HSA-174132 Free APC/C phosphorylated by Cyclin B:Cdc2
R-HSA-174251 Phosphorylation of Cdh1 by Cyclin B1:Cdc2
R-HSA-380278 CCNB1:p-T160-CDK1 phosphorylates NUMA1
R-HSA-2245218 CDK1 phosphorylates PHF8
R-HSA-2294600 CDK1 phosphorylates condensin II subunit NCAPD3
R-HSA-2430533 CDK1 phosphorylates MASTL
R-NUL-2434198 CDK1 phosphorylates Mastl
R-HSA-5195402 CDK1 phosphorylates LPIN
R-HSA-5244669 CDK1 phosphorylates lamins and facilitates depolymerization of lamin filaments
R-HSA-9009282 CDK1 phosphorylates RUNX2
R-HSA-174227 Ubiquitination of Cyclin B by phospho-APC/C:Cdc20 complex
R-HSA-170161 Dephosphorylation of cytoplasmic Cyclin B1/B2:phospho-Cdc2 (Thr 14, Tyr 15) complexes by CDC25B
R-HSA-170055 Myt-1 mediated phosphorylation of Cyclin B:Cdc2 complexes
R-HSA-4088024 CCNA:CDK1/2 complexes and CCNB1:CDK1 complexes phosphorylate FOXM1
R-HSA-2172183 Phosphorylation of GORASP1, GOLGA2 and RAB1A by CDK1:CCNB
R-NUL-2422970 Phosphorylation of Gorasp1, Golga2 and RAB1A by CDK1:CCNB
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-2468293 CDK1 phosphorylates CDCA5 (Sororin) at chromosomal arms
R-HSA-2514854 CDK1 phosphorylates condensin I
R-HSA-2984220 CDK1:CCNB phosphorylates NEK9
R-HSA-2990882 CDK1 phosphorylates NUP98
R-HSA-4086410 CDK1 phosphorylates BORA
R-HSA-8852306 Mitotic phosphorylation-induced dissociation of GTSE1 from microtubule plus ends
R-HSA-156711 Polo-like kinase mediated events
R-HSA-113507 E2F-enabled inhibition of pre-replication complex formation
R-HSA-69273 Cyclin A/B1/B2 associated events during G2/M transition
R-HSA-69478 G2/M DNA replication checkpoint
R-HSA-75035 Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex
R-HSA-69275 G2/M Transition
R-HSA-174048 APC/C:Cdc20 mediated degradation of Cyclin B
R-HSA-6804114 TP53 Regulates Transcription of Genes Involved in G2 Cell Cycle Arrest
R-HSA-113510 E2F mediated regulation of DNA replication
R-HSA-69481 G2/M Checkpoints
R-HSA-69473 G2/M DNA damage checkpoint
R-HSA-176417 Phosphorylation of Emi1
R-HSA-176412 Phosphorylation of the APC/C
R-HSA-176408 Regulation of APC/C activators between G1/S and early anaphase
R-HSA-68875 Mitotic Prophase
R-HSA-2299718 Condensation of Prophase Chromosomes
R-HSA-2465910 MASTL Facilitates Mitotic Progression
R-HSA-4419969 Depolymerisation of the Nuclear Lamina
R-HSA-8878166 Transcriptional regulation by RUNX2
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-176409 APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-6791312 TP53 Regulates Transcription of Cell Cycle Genes
R-HSA-69206 G1/S Transition
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-176814 Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-174143 APC/C-mediated degradation of cell cycle proteins
R-HSA-68886 M Phase
R-HSA-2980766 Nuclear Envelope Breakdown
R-HSA-212436 Generic Transcription Pathway
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-162658 Golgi Cisternae Pericentriolar Stack Reorganization
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-2514853 Condensation of Prometaphase Chromosomes
R-HSA-2980767 Activation of NIMA Kinases NEK9, NEK6, NEK7
R-HSA-3301854 Nuclear Pore Complex (NPC) Disassembly
R-HSA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-453279 Mitotic G1-G1/S phases
R-HSA-1640170 Cell Cycle
R-HSA-453276 Regulation of mitotic cell cycle
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-8852276 The role of GTSE1 in G2/M progression after G2 checkpoint
R-HSA-68877 Mitotic Prometaphase
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A8K066, CCNB, CCNB1_HUMAN, ENST00000256442.1, ENST00000256442.2, ENST00000256442.3, ENST00000256442.4, ENST00000256442.5, ENST00000256442.6, ENST00000256442.7, ENST00000256442.8, ENST00000256442.9, NM_031966, P14635, Q5TZP9, uc317fus.1, uc317fus.2
UCSC ID: ENST00000256442.10_4
RefSeq Accession: NM_031966.4
Protein: P14635 (aka CCNB1_HUMAN or CGB1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.