Human Gene CACTIN (ENST00000429344.7_7) from GENCODE V47lift37
  Description: cactin, spliceosome C complex subunit, transcript variant 1 (from RefSeq NM_001080543.2)
Gencode Transcript: ENST00000429344.7_7
Gencode Gene: ENSG00000105298.14_11
Transcript (Including UTRs)
   Position: hg19 chr19:3,610,643-3,626,788 Size: 16,146 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr19:3,611,921-3,626,760 Size: 14,840 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:3,610,643-3,626,788)mRNA (may differ from genome)Protein (758 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CATIN_HUMAN
DESCRIPTION: RecName: Full=Cactin; AltName: Full=Renal carcinoma antigen NY-REN-24;
FUNCTION: Involved in the regulation of innate immune response. Acts as negative regulator of Toll-like receptor and interferon- regulatory factor (IRF) signaling pathways. Contributes to the regulation of transcriptional activation of NF-kappa-B target genes in response to endogenous proinflammatory stimuli. May play a role during early embryonic development. Probably involved in pre-mRNA splicing.
SUBUNIT: Interacts (via N-terminus domain) with NFKBIL1; the interaction occurs in a proinflammatory-independent manner. Does not interact with RELA NF-kappa-B subunit. Identified in the spliceosome C complex.
SUBCELLULAR LOCATION: Nucleus. Note=Nuclear localization with a speckled expression pattern in some cells. Colocalizes with NFKBIL1 in the nucleus.
MISCELLANEOUS: Antigen recognized by autologous antibody in patients with renal-cell carcinoma.
SIMILARITY: Belongs to the CACTIN family.
CAUTION: An ORF (C19orf029 OS) has been described in the opposite strand of the C-terminus of this gene.
SEQUENCE CAUTION: Sequence=AAC24305.1; Type=Erroneous gene model prediction; Sequence=AAC32903.1; Type=Erroneous gene model prediction; Sequence=AAD42868.1; Type=Frameshift; Positions=711; Sequence=AAH04262.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=EAW69298.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CACTIN
Diseases sorted by gene-association score: renal cell carcinoma (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.87 RPKM in Ovary
Total median expression: 431.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.1028-0.432 Picture PostScript Text
3' UTR -583.501278-0.457 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019134 - Cactin_C
IPR018816 - Cactin_dom

Pfam Domains:
PF09732 - Cactus-binding C-terminus of cactin protein
PF10312 - Conserved mid region of cactin

ModBase Predicted Comparative 3D Structure on Q8WUQ7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005515 protein binding

Biological Process:
GO:0000398 mRNA splicing, via spliceosome
GO:0001933 negative regulation of protein phosphorylation
GO:0002376 immune system process
GO:0006397 mRNA processing
GO:0007275 multicellular organism development
GO:0008380 RNA splicing
GO:0031665 negative regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 negative regulation of NF-kappaB transcription factor activity
GO:0032688 negative regulation of interferon-beta production
GO:0032717 negative regulation of interleukin-8 production
GO:0032720 negative regulation of tumor necrosis factor production
GO:0034122 negative regulation of toll-like receptor signaling pathway
GO:0045087 innate immune response
GO:0060339 negative regulation of type I interferon-mediated signaling pathway
GO:0071222 cellular response to lipopolysaccharide
GO:0071347 cellular response to interleukin-1
GO:0071356 cellular response to tumor necrosis factor

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005829 cytosol
GO:0016607 nuclear speck
GO:0071013 catalytic step 2 spliceosome


-  Descriptions from all associated GenBank mRNAs
  AF052087 - Homo sapiens clone 23604 mRNA sequence.
BC004262 - Homo sapiens chromosome 19 open reading frame 29, mRNA (cDNA clone IMAGE:3609158), partial cds.
AF155102 - Homo sapiens NY-REN-24 antigen mRNA, partial cds.
BC019848 - Homo sapiens chromosome 19 open reading frame 29, mRNA (cDNA clone IMAGE:5113225), partial cds.
AY917150 - Homo sapiens cactin mRNA, complete cds.
LF208827 - JP 2014500723-A/16330: Polycomb-Associated Non-Coding RNAs.
AK299963 - Homo sapiens cDNA FLJ59047 complete cds.
JD301846 - Sequence 282870 from Patent EP1572962.
JD057958 - Sequence 38982 from Patent EP1572962.
JD114845 - Sequence 95869 from Patent EP1572962.
JD485927 - Sequence 466951 from Patent EP1572962.
JD544459 - Sequence 525483 from Patent EP1572962.
JD108391 - Sequence 89415 from Patent EP1572962.
JD156381 - Sequence 137405 from Patent EP1572962.
JD055654 - Sequence 36678 from Patent EP1572962.
JD318078 - Sequence 299102 from Patent EP1572962.
JD391783 - Sequence 372807 from Patent EP1572962.
JD498691 - Sequence 479715 from Patent EP1572962.
JD190121 - Sequence 171145 from Patent EP1572962.
JD458300 - Sequence 439324 from Patent EP1572962.
JD196002 - Sequence 177026 from Patent EP1572962.
BC156484 - Synthetic construct Homo sapiens clone IMAGE:100063054, MGC:190679 chromosome 19 open reading frame 29 (C19orf29) mRNA, encodes complete protein.
BC172549 - Synthetic construct Homo sapiens clone IMAGE:100069243, MGC:199254 chromosome 19 open reading frame 29 (C19orf29) mRNA, encodes complete protein.
LF323165 - JP 2014500723-A/130668: Polycomb-Associated Non-Coding RNAs.
JD407086 - Sequence 388110 from Patent EP1572962.
DQ570579 - Homo sapiens piRNA piR-30691, complete sequence.
JD222311 - Sequence 203335 from Patent EP1572962.
JD121720 - Sequence 102744 from Patent EP1572962.
JD554737 - Sequence 535761 from Patent EP1572962.
LF323164 - JP 2014500723-A/130667: Polycomb-Associated Non-Coding RNAs.
LF323163 - JP 2014500723-A/130666: Polycomb-Associated Non-Coding RNAs.
LF323162 - JP 2014500723-A/130665: Polycomb-Associated Non-Coding RNAs.
JD215907 - Sequence 196931 from Patent EP1572962.
JD457946 - Sequence 438970 from Patent EP1572962.
MA558742 - JP 2018138019-A/130668: Polycomb-Associated Non-Coding RNAs.
MA558741 - JP 2018138019-A/130667: Polycomb-Associated Non-Coding RNAs.
MA558740 - JP 2018138019-A/130666: Polycomb-Associated Non-Coding RNAs.
MA558739 - JP 2018138019-A/130665: Polycomb-Associated Non-Coding RNAs.
MA444404 - JP 2018138019-A/16330: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NNA9, A9UL12, C19orf29, CATIN_HUMAN, ENST00000429344.1, ENST00000429344.2, ENST00000429344.3, ENST00000429344.4, ENST00000429344.5, ENST00000429344.6, NM_001080543, O75229, Q7LE08, Q8WUQ7, Q9BTA6, Q9Y5A4, uc319ygk.1, uc319ygk.2
UCSC ID: ENST00000429344.7_7
RefSeq Accession: NM_001080543.2
Protein: Q8WUQ7 (aka CATIN_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.