Human Gene BAZ1B (ENST00000339594.9_7) from GENCODE V47lift37
  Description: bromodomain adjacent to zinc finger domain 1B, transcript variant 2 (from RefSeq NM_032408.4)
Gencode Transcript: ENST00000339594.9_7
Gencode Gene: ENSG00000009954.11_9
Transcript (Including UTRs)
   Position: hg19 chr7:72,854,736-72,936,623 Size: 81,888 Total Exon Count: 20 Strand: -
Coding Region
   Position: hg19 chr7:72,856,526-72,936,263 Size: 79,738 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:72,854,736-72,936,623)mRNA (may differ from genome)Protein (1483 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BAZ1B_HUMAN
DESCRIPTION: RecName: Full=Tyrosine-protein kinase BAZ1B; EC=2.7.10.2; AltName: Full=Bromodomain adjacent to zinc finger domain protein 1B; AltName: Full=Williams syndrome transcription factor; AltName: Full=Williams-Beuren syndrome chromosomal region 10 protein; AltName: Full=Williams-Beuren syndrome chromosomal region 9 protein; AltName: Full=hWALp2;
FUNCTION: Atypical tyrosine-protein kinase that plays a central role in chromatin remodeling and acts as a transcription regulator. Involved in DNA damage response by phosphorylating 'Tyr-142' of histone H2AX (H2AXY142ph). H2AXY142ph plays a central role in DNA repair and acts as a mark that distinguishes between apoptotic and repair responses to genotoxic stress. Essential component of the WICH complex, a chromatin remodeling complex that mobilizes nucleosomes and reconfigures irregular chromatin to a regular nucleosomal array structure. The WICH complex regulates the transcription of various genes, has a role in RNA polymerase I and RNA polymerase III transcription, mediates the histone H2AX phosphorylation at 'Tyr-142', and is involved in the maintenance of chromatin structures during DNA replication processes. In the complex, it mediates the recruitment of the WICH complex to replication foci during DNA replication. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR- mediated transrepression of the CYP27B1 gene. In the WINAC complex, plays an essential role by targeting the complex to acetylated histones, an essential step for VDR-promoter association.
CATALYTIC ACTIVITY: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
COFACTOR: Manganese.
SUBUNIT: Interacts with MYO1C (By similarity). Interacts with CDT1. Interacts with SMARCA5/SNF2H; the interaction is direct and forms the WICH complex. Component of the B-WICH complex, at least composed of SMARCA5/SNF2H, BAZ1B/WSTF, SF3B1, DEK, MYO1C, ERCC6, MYBBP1A and DDX21. Component of the WINAC complex, at least composed of SMARCA2, SMARCA4, SMARCB1, SMARCC1, SMARCC2, SMARCD1, SMARCE1, ACTL6A, BAZ1B/WSTF, ARID1A, SUPT16H, CHAF1A and TOP2B. Interacts with VDR; in a ligand-dependent manner. Interacts with PCNA; the interaction is direct.
INTERACTION: O60264:SMARCA5; NbExp=6; IntAct=EBI-927482, EBI-352588;
SUBCELLULAR LOCATION: Nucleus. Note=Accumulates in pericentromeric heterochromatin during replication. Targeted to replication foci throughout S phase via its association with PCNA.
TISSUE SPECIFICITY: Ubiquitously expressed with high levels of expression in heart, brain, placenta, skeletal muscle and ovary.
DEVELOPMENTAL STAGE: Expressed at equal levels in 19-23 weeks old fetal tissues.
DOMAIN: The N-terminal part (1-345), including the WAC domain and the C motif, mediates the tyrosine-protein kinase activity.
DOMAIN: The bromo domain mediates the specific interaction with acetylated histones.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
DISEASE: Note=BAZ1B is located in the Williams-Beuren syndrome (WBS) critical region. WBS results from a hemizygous deletion of several genes on chromosome 7q11.23, thought to arise as a consequence of unequal crossing over between highly homologous low-copy repeat sequences flanking the deleted region. Haploinsufficiency of BAZ1B may be the cause of certain cardiovascular and musculo-skeletal abnormalities observed in the disease.
SIMILARITY: Belongs to the WAL family. BAZ1B subfamily.
SIMILARITY: Contains 1 bromo domain.
SIMILARITY: Contains 1 DDT domain.
SIMILARITY: Contains 1 PHD-type zinc finger.
SIMILARITY: Contains 1 WAC domain.
SEQUENCE CAUTION: Sequence=AAC97879.1; Type=Frameshift; Positions=1031, 1042, 1422; Sequence=AAD04720.1; Type=Erroneous gene model prediction; Sequence=AAH65029.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=BAA89210.1; Type=Frameshift; Positions=1478;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BAZ1B
Diseases sorted by gene-association score: williams-beuren syndrome* (39), chromosomal deletion syndrome (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 24.80 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 720.92 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -196.10360-0.545 Picture PostScript Text
3' UTR -385.601303-0.296 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001487 - Bromodomain
IPR018359 - Bromodomain_CS
IPR018500 - DDT_dom_subgr
IPR018501 - DDT_dom_superfamily
IPR013136 - WSTF_Acf1_Cbp146
IPR019786 - Zinc_finger_PHD-type_CS
IPR011011 - Znf_FYVE_PHD
IPR001965 - Znf_PHD
IPR019787 - Znf_PHD-finger
IPR001841 - Znf_RING
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF00439 - Bromodomain
PF00628 - PHD-finger
PF10537 - ATP-utilising chromatin assembly and remodelling N-terminal
PF15612 - WSTF, HB1, Itc1p, MBD9 motif 1
PF15613 - Williams-Beuren syndrome DDT (WSD), D-TOX E motif

SCOP Domains:
47370 - Bromodomain
57850 - RING/U-box
57889 - Cysteine-rich domain
57903 - FYVE/PHD zinc finger

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1F62 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9UIG0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004713 protein tyrosine kinase activity
GO:0004715 non-membrane spanning protein tyrosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0035173 histone kinase activity
GO:0042393 histone binding
GO:0046872 metal ion binding

Biological Process:
GO:0006333 chromatin assembly or disassembly
GO:0006338 chromatin remodeling
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006974 cellular response to DNA damage stimulus
GO:0016310 phosphorylation
GO:0016572 histone phosphorylation
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0045815 positive regulation of gene expression, epigenetic

Cellular Component:
GO:0000793 condensed chromosome
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005721 pericentric heterochromatin
GO:0016604 nuclear body
GO:0043596 nuclear replication fork


-  Descriptions from all associated GenBank mRNAs
  AF084479 - Homo sapiens Williams-Beuren syndrome deletion transcript 9 (WBSCR9) mRNA, complete cds.
AF072810 - Homo sapiens transcription factor WSTF mRNA, complete cds.
BC136520 - Homo sapiens bromodomain adjacent to zinc finger domain, 1B, mRNA (cDNA clone MGC:168133 IMAGE:9020510), complete cds.
AB032253 - Homo sapiens BAZ1B mRNA for bromodomain adjacent to zinc finger domain 1B, complete cds.
BC041561 - Homo sapiens, clone IMAGE:5813200, mRNA.
BC080544 - Homo sapiens cDNA clone IMAGE:5806851.
AK123274 - Homo sapiens cDNA FLJ41280 fis, clone BRAMY2037629, highly similar to Homo sapiens Williams-Beuren syndrome deletion transcript 9 (WBSCR9) mRNA.
BC050599 - Homo sapiens, clone IMAGE:5744763, mRNA.
JD072902 - Sequence 53926 from Patent EP1572962.
JD429085 - Sequence 410109 from Patent EP1572962.
JD178124 - Sequence 159148 from Patent EP1572962.
JD485863 - Sequence 466887 from Patent EP1572962.
JD232616 - Sequence 213640 from Patent EP1572962.
JD432054 - Sequence 413078 from Patent EP1572962.
JD432055 - Sequence 413079 from Patent EP1572962.
JD106229 - Sequence 87253 from Patent EP1572962.
JD290559 - Sequence 271583 from Patent EP1572962.
JD415695 - Sequence 396719 from Patent EP1572962.
JD258662 - Sequence 239686 from Patent EP1572962.
JD213756 - Sequence 194780 from Patent EP1572962.
JD201100 - Sequence 182124 from Patent EP1572962.
JD491000 - Sequence 472024 from Patent EP1572962.
JD165788 - Sequence 146812 from Patent EP1572962.
JD563329 - Sequence 544353 from Patent EP1572962.
JD037233 - Sequence 18257 from Patent EP1572962.
JD335055 - Sequence 316079 from Patent EP1572962.
JD323771 - Sequence 304795 from Patent EP1572962.
AK123564 - Homo sapiens cDNA FLJ41570 fis, clone CTONG2009440.
BC065029 - Homo sapiens bromodomain adjacent to zinc finger domain, 1B, mRNA (cDNA clone IMAGE:6066431), partial cds.
JD200518 - Sequence 181542 from Patent EP1572962.
JD365561 - Sequence 346585 from Patent EP1572962.
JD365747 - Sequence 346771 from Patent EP1572962.
JD406800 - Sequence 387824 from Patent EP1572962.
JD132551 - Sequence 113575 from Patent EP1572962.
JD461657 - Sequence 442681 from Patent EP1572962.
JD537977 - Sequence 519001 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UIG0 (Reactome details) participates in the following event(s):

R-HSA-5250947 B-WICH complex binds rDNA promoter
R-HSA-5250930 B-WICH recruits histone acetyltransferases
R-HSA-5683930 WICH phosphorylates H2AFX on Y142
R-HSA-5250938 B-WICH:histone acetyltransferase acetylates histone H3 at lysine-9
R-HSA-5250924 B-WICH complex positively regulates rRNA expression
R-HSA-5250913 Positive epigenetic regulation of rRNA expression
R-HSA-5693565 Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
R-HSA-212165 Epigenetic regulation of gene expression
R-HSA-5693606 DNA Double Strand Break Response
R-HSA-74160 Gene expression (Transcription)
R-HSA-5693532 DNA Double-Strand Break Repair
R-HSA-73894 DNA Repair

-  Other Names for This Gene
  Alternate Gene Symbols: B9EGK3, BAZ1B_HUMAN, D3DXE9, ENST00000339594.1, ENST00000339594.2, ENST00000339594.3, ENST00000339594.4, ENST00000339594.5, ENST00000339594.6, ENST00000339594.7, ENST00000339594.8, NM_032408, O95039, O95247, O95277, Q6P1K4, Q86UJ6, Q9UIG0, uc317vkg.1, uc317vkg.2, WBSC10, WBSCR10, WBSCR9, WSTF
UCSC ID: ENST00000339594.9_7
RefSeq Accession: NM_032408.4
Protein: Q9UIG0 (aka BAZ1B_HUMAN or BA1B_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.