Human Gene ASL (ENST00000304874.14_4) from GENCODE V47lift37
  Description: argininosuccinate lyase, transcript variant 1 (from RefSeq NM_001024943.2)
Gencode Transcript: ENST00000304874.14_4
Gencode Gene: ENSG00000126522.17_14
Transcript (Including UTRs)
   Position: hg19 chr7:65,540,806-65,558,563 Size: 17,758 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr7:65,541,069-65,557,899 Size: 16,831 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:65,540,806-65,558,563)mRNA (may differ from genome)Protein (464 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ARLY_HUMAN
DESCRIPTION: RecName: Full=Argininosuccinate lyase; Short=ASAL; EC=4.3.2.1; AltName: Full=Arginosuccinase;
CATALYTIC ACTIVITY: 2-(N(omega)-L-arginino)succinate = fumarate + L-arginine.
ENZYME REGULATION: Enzyme activity is regulated by acetylation (By similarity).
PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis; L- arginine from L-ornithine and carbamoyl phosphate: step 3/3.
PATHWAY: Nitrogen metabolism; urea cycle; L-arginine and fumarate from (N(omega)-L-arginino)succinate: step 1/1.
SUBUNIT: Homotetramer.
PTM: Acetylation modifies enzyme activity in response to alterations of extracellular nutrient availability. Acetylation increased with trichostin A (TSA) or with nicotinamide (NAM). Glucose increases acetylation by about a factor of 3 with decreasing enzyme activity. Acetylation on Lys-288 is decreased on the addition of extra amino acids resulting in activation of enzyme activity.
DISEASE: Defects in ASL are the cause of arginosuccinic aciduria (ARGINSA) [MIM:207900]. An autosomal recessive disorder of the urea cycle. The disease is characterized by mental and physical retardation, liver enlargement, skin lesions, dry and brittle hair showing trichorrhexis nodosa microscopically and fluorescing red, convulsions, and episodic unconsciousness.
SIMILARITY: Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
SEQUENCE CAUTION: Sequence=AAA51786.1; Type=Frameshift; Positions=387, 452;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ASL";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ASL
Diseases sorted by gene-association score: argininosuccinic aciduria* (1936), citrullinemia (20), urea cycle disorder (19), argininemia (18), ornithine transcarbamylase deficiency (15), hyperammonemia (14), orotic aciduria (12), lysinuric protein intolerance (8), bardet-biedl syndrome 2 (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 76.63 RPKM in Liver
Total median expression: 497.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.5081-0.389 Picture PostScript Text
3' UTR -240.70664-0.362 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009049 - Argininosuccinate_lyase
IPR003031 - D_crystallin
IPR000362 - Fumarate_lyase
IPR020557 - Fumarate_lyase_CS
IPR008948 - L-Aspartase-like
IPR022761 - Lyase1_N

Pfam Domains:
PF00206 - Lyase
PF14698 - Argininosuccinate lyase C-terminal

SCOP Domains:
48557 - L-aspartase-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1AOS - X-ray MuPIT 1K62 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P04424
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004056 argininosuccinate lyase activity
GO:0005515 protein binding
GO:0016829 lyase activity
GO:0042802 identical protein binding

Biological Process:
GO:0000050 urea cycle
GO:0006526 arginine biosynthetic process
GO:0008652 cellular amino acid biosynthetic process
GO:0042450 arginine biosynthetic process via ornithine

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  KJ896464 - Synthetic construct Homo sapiens clone ccsbBroadEn_05858 ASL gene, encodes complete protein.
LF384036 - JP 2014500723-A/191539: Polycomb-Associated Non-Coding RNAs.
BC008195 - Homo sapiens argininosuccinate lyase, mRNA (cDNA clone MGC:5094 IMAGE:3048146), complete cds.
J03058 - Human argininosuccinate lyase mRNA, complete cds.
AK300519 - Homo sapiens cDNA FLJ56583 complete cds, highly similar to Argininosuccinate lyase (EC 4.3.2.1).
AK310912 - Homo sapiens cDNA, FLJ17954.
AK316334 - Homo sapiens cDNA, FLJ79233 complete cds, highly similar to Argininosuccinate lyase (EC 4.3.2.1).
M14218 - Human argininosuccinate lyase mRNA, complete cds.
M57638 - Human argininosuccinate lyase mRNA, complete cds.
Y00753 - Human mRNA for argininosuccinate lyase.
BC033146 - Homo sapiens argininosuccinate lyase, mRNA (cDNA clone MGC:45766 IMAGE:4101398), complete cds.
AY203938 - Homo sapiens LP3236 mRNA, complete cds.
KU177920 - Homo sapiens argininosuccinate lyase isoform 1 (ASL) mRNA, partial cds.
KU177921 - Homo sapiens argininosuccinate lyase isoform 2 (ASL) mRNA, partial cds.
KU177922 - Homo sapiens argininosuccinate lyase isoform 3 (ASL) mRNA, partial cds, alternatively spliced.
LF359792 - JP 2014500723-A/167295: Polycomb-Associated Non-Coding RNAs.
LF359790 - JP 2014500723-A/167293: Polycomb-Associated Non-Coding RNAs.
LF359789 - JP 2014500723-A/167292: Polycomb-Associated Non-Coding RNAs.
LF359788 - JP 2014500723-A/167291: Polycomb-Associated Non-Coding RNAs.
LF359787 - JP 2014500723-A/167290: Polycomb-Associated Non-Coding RNAs.
LF359786 - JP 2014500723-A/167289: Polycomb-Associated Non-Coding RNAs.
JD020691 - Sequence 1715 from Patent EP1572962.
JD485148 - Sequence 466172 from Patent EP1572962.
JD034149 - Sequence 15173 from Patent EP1572962.
JD540391 - Sequence 521415 from Patent EP1572962.
JD466388 - Sequence 447412 from Patent EP1572962.
MA619613 - JP 2018138019-A/191539: Polycomb-Associated Non-Coding RNAs.
MA595369 - JP 2018138019-A/167295: Polycomb-Associated Non-Coding RNAs.
MA595367 - JP 2018138019-A/167293: Polycomb-Associated Non-Coding RNAs.
MA595366 - JP 2018138019-A/167292: Polycomb-Associated Non-Coding RNAs.
MA595365 - JP 2018138019-A/167291: Polycomb-Associated Non-Coding RNAs.
MA595364 - JP 2018138019-A/167290: Polycomb-Associated Non-Coding RNAs.
MA595363 - JP 2018138019-A/167289: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-4983 - citrulline-nitric oxide cycle
PWY-4984 - urea cycle

Reactome (by CSHL, EBI, and GO)

Protein P04424 (Reactome details) participates in the following event(s):

R-HSA-70573 argininosuccinate <=> fumarate + arginine
R-HSA-70635 Urea cycle
R-HSA-351202 Metabolism of polyamines
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ARLY_HUMAN, E7EMI0, E9PE48, ENST00000304874.1, ENST00000304874.10, ENST00000304874.11, ENST00000304874.12, ENST00000304874.13, ENST00000304874.2, ENST00000304874.3, ENST00000304874.4, ENST00000304874.5, ENST00000304874.6, ENST00000304874.7, ENST00000304874.8, ENST00000304874.9, NM_001024943, P04424, Q6LDS5, Q96HS2, uc317nnn.1, uc317nnn.2
UCSC ID: ENST00000304874.14_4
RefSeq Accession: NM_000048.4
Protein: P04424 (aka ARLY_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ASL:
args-aciduria (Argininosuccinate Lyase Deficiency)
ucd-overview (Urea Cycle Disorders Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.