Human Gene ADAM11 (ENST00000200557.11_5) from GENCODE V47lift37
  Description: ADAM metallopeptidase domain 11, transcript variant 1 (from RefSeq NM_002390.6)
Gencode Transcript: ENST00000200557.11_5
Gencode Gene: ENSG00000073670.14_10
Transcript (Including UTRs)
   Position: hg19 chr17:42,836,356-42,859,214 Size: 22,859 Total Exon Count: 27 Strand: +
Coding Region
   Position: hg19 chr17:42,836,568-42,857,122 Size: 20,555 Coding Exon Count: 27 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:42,836,356-42,859,214)mRNA (may differ from genome)Protein (769 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ADA11_HUMAN
DESCRIPTION: RecName: Full=Disintegrin and metalloproteinase domain-containing protein 11; Short=ADAM 11; AltName: Full=Metalloproteinase-like, disintegrin-like, and cysteine-rich protein; Short=MDC; Flags: Precursor;
FUNCTION: Probable ligand for integrin in the brain. This is a non catalytic metalloprotease-like protein.
SUBUNIT: Can bind to LGI1 and LGI4 (By similarity).
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Expressed predominantly in brain. Slightly detected or not at all in other tissues.
DOMAIN: A conserved motif [AVN[ED]CD] within the disintegrin-like domain could be involved in the binding to the integrin receptor.
PTM: The precursor is cleaved by a furin endopeptidase (By similarity).
SIMILARITY: Contains 1 disintegrin domain.
SIMILARITY: Contains 1 EGF-like domain.
SIMILARITY: Contains 1 peptidase M12B domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 94.96 RPKM in Brain - Cerebellum
Total median expression: 345.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -89.20212-0.421 Picture PostScript Text
3' UTR -923.802092-0.442 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006586 - ADAM_Cys-rich
IPR001762 - Blood-coag_inhib_Disintegrin
IPR018358 - Disintegrin_CS
IPR000742 - EG-like_dom
IPR013032 - EGF-like_CS
IPR024079 - MetalloPept_cat_dom
IPR001590 - Peptidase_M12B
IPR002870 - Peptidase_M12B_N

Pfam Domains:
PF00200 - Disintegrin
PF01421 - Reprolysin (M12B) family zinc metalloprotease
PF01562 - Reprolysin family propeptide
PF07974 - EGF-like domain
PF08516 - ADAM cysteine-rich
PF13582 - Metallo-peptidase family M12B Reprolysin-like
PF13688 - Metallo-peptidase family M12
PF18720 - Tenascin EGF domain

SCOP Domains:
55486 - Metalloproteases ("zincins"), catalytic domain
57552 - Blood coagulation inhibitor (disintegrin)
57196 - EGF/Laminin

ModBase Predicted Comparative 3D Structure on O75078
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity
GO:0005178 integrin binding
GO:0008237 metallopeptidase activity

Biological Process:
GO:0006508 proteolysis
GO:0007229 integrin-mediated signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031012 extracellular matrix


-  Descriptions from all associated GenBank mRNAs
  BC144550 - Homo sapiens cDNA clone IMAGE:9053077, containing frame-shift errors.
AB462930 - Synthetic construct DNA, clone: pF1KB7294, Homo sapiens ADAM11 gene for ADAM metallopeptidase domain 11, without stop codon, in Flexi system.
BC111916 - Synthetic construct Homo sapiens clone IMAGE:40080743, MGC:133456 ADAM11 protein (ADAM11) mRNA, encodes complete protein.
AB009675 - Homo sapiens mRNA for MDC/ADAM11, complete cds.
E10493 - cDNA encoding MDC protein.
AK296512 - Homo sapiens cDNA FLJ60626 complete cds, highly similar to ADAM 11 precursor (A disintegrin and metalloproteinase domain 11).
D17390 - Homo sapiens mRNA for MDC protein, complete cds.
E10491 - cDNA encoding MDC protein.
E10492 - cDNA encoding MDC protein.
E10490 - cDNA encoding a consensus region of MDC protein.
JD164480 - Sequence 145504 from Patent EP1572962.
JD044445 - Sequence 25469 from Patent EP1572962.
JD282187 - Sequence 263211 from Patent EP1572962.
JD422770 - Sequence 403794 from Patent EP1572962.
JD326403 - Sequence 307427 from Patent EP1572962.
JD415340 - Sequence 396364 from Patent EP1572962.
JD462407 - Sequence 443431 from Patent EP1572962.
JD256069 - Sequence 237093 from Patent EP1572962.
JD484776 - Sequence 465800 from Patent EP1572962.
JD216957 - Sequence 197981 from Patent EP1572962.
JD476503 - Sequence 457527 from Patent EP1572962.
JD459410 - Sequence 440434 from Patent EP1572962.
JD314310 - Sequence 295334 from Patent EP1572962.
JD490358 - Sequence 471382 from Patent EP1572962.
JD220626 - Sequence 201650 from Patent EP1572962.
JD210951 - Sequence 191975 from Patent EP1572962.
JD364246 - Sequence 345270 from Patent EP1572962.
JD470393 - Sequence 451417 from Patent EP1572962.
JD472855 - Sequence 453879 from Patent EP1572962.
JD185787 - Sequence 166811 from Patent EP1572962.
JD163947 - Sequence 144971 from Patent EP1572962.
JD280693 - Sequence 261717 from Patent EP1572962.
JD132052 - Sequence 113076 from Patent EP1572962.
JD123844 - Sequence 104868 from Patent EP1572962.
JD186996 - Sequence 168020 from Patent EP1572962.
JD158386 - Sequence 139410 from Patent EP1572962.
JD521692 - Sequence 502716 from Patent EP1572962.
JD191280 - Sequence 172304 from Patent EP1572962.
JD126463 - Sequence 107487 from Patent EP1572962.
JD421013 - Sequence 402037 from Patent EP1572962.
JD046461 - Sequence 27485 from Patent EP1572962.
JD053456 - Sequence 34480 from Patent EP1572962.
JD546725 - Sequence 527749 from Patent EP1572962.
JD219051 - Sequence 200075 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O75078 (Reactome details) participates in the following event(s):

R-HSA-5682826 LGI1 binds ADAM11
R-HSA-5682709 LGI4 binds ADAM22,23,11
R-HSA-5682910 LGI-ADAM interactions
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: ADA11_HUMAN, ENST00000200557.1, ENST00000200557.10, ENST00000200557.2, ENST00000200557.3, ENST00000200557.4, ENST00000200557.5, ENST00000200557.6, ENST00000200557.7, ENST00000200557.8, ENST00000200557.9, MDC, NM_002390, O75078, Q14808, Q14809, Q14810, uc317chw.1, uc317chw.2
UCSC ID: ENST00000200557.11_5
RefSeq Accession: NM_002390.6
Protein: O75078 (aka ADA11_HUMAN or AD11_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.