Human Gene ACAT1 (ENST00000265838.9_4) from GENCODE V47lift37
  Description: acetyl-CoA acetyltransferase 1, transcript variant 2 (from RefSeq NM_000019.4)
Gencode Transcript: ENST00000265838.9_4
Gencode Gene: ENSG00000075239.15_9
Transcript (Including UTRs)
   Position: hg19 chr11:107,992,294-108,018,330 Size: 26,037 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr11:107,992,334-108,018,117 Size: 25,784 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:107,992,294-108,018,330)mRNA (may differ from genome)Protein (427 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: THIL_HUMAN
DESCRIPTION: RecName: Full=Acetyl-CoA acetyltransferase, mitochondrial; EC=2.3.1.9; AltName: Full=Acetoacetyl-CoA thiolase; AltName: Full=T2; Flags: Precursor;
FUNCTION: Plays a major role in ketone body metabolism.
CATALYTIC ACTIVITY: 2 acetyl-CoA = CoA + acetoacetyl-CoA.
ENZYME REGULATION: Activated by potassium ions, but not sodium ions.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=4 uM for acteoacetyl coenzyme A; KM=20 uM for coenzyme A; KM=8 uM for 2-methylacteoacetyl coenzyme A; KM=508 uM for acetyl coenzyme A;
SUBUNIT: Homotetramer.
SUBCELLULAR LOCATION: Mitochondrion.
DISEASE: Defects in ACAT1 are a cause of 3-ketothiolase deficiency (3KTD) [MIM:203750]; also known as alpha- methylacetoaceticaciduria. 3KTD is an inborn error of isoleucine catabolism characterized by intermittent ketoacidotic attacks associated with unconsciousness. Some patients die during an attack or are mentally retarded. Urinary excretion of 2-methyl-3- hydroxybutyric acid, 2-methylacetoacetic acid, triglylglycine, butanone is increased. It seems likely that the severity of this disease correlates better with the environmental or acquired factors than with the ACAT1 genotype.
SIMILARITY: Belongs to the thiolase family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ACAT1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACAT1
Diseases sorted by gene-association score: alpha-methylacetoacetic aciduria* (1581), ketothiolase deficiency* (151), sitosterolemia (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 75.75 RPKM in Liver
Total median expression: 824.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.7040-0.192 Picture PostScript Text
3' UTR -40.10213-0.188 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002155 - Thiolase
IPR016039 - Thiolase-like
IPR016038 - Thiolase-like_subgr
IPR020615 - Thiolase_acyl_enz_int_AS
IPR020610 - Thiolase_AS
IPR020617 - Thiolase_C
IPR020613 - Thiolase_CS
IPR020616 - Thiolase_N

Pfam Domains:
PF00108 - Thiolase, N-terminal domain
PF00109 - Beta-ketoacyl synthase, N-terminal domain
PF02803 - Thiolase, C-terminal domain

SCOP Domains:
53901 - Thiolase-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2F2S - X-ray MuPIT 2IB7 - X-ray MuPIT 2IB8 - X-ray MuPIT 2IB9 - X-ray MuPIT 2IBU - X-ray MuPIT 2IBW - X-ray MuPIT 2IBY - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P24752
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0003985 acetyl-CoA C-acetyltransferase activity
GO:0016740 transferase activity
GO:0016746 transferase activity, transferring acyl groups
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups
GO:0016830 carbon-carbon lyase activity
GO:0016885 ligase activity, forming carbon-carbon bonds
GO:0019899 enzyme binding
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0050662 coenzyme binding

Biological Process:
GO:0001889 liver development
GO:0006085 acetyl-CoA biosynthetic process
GO:0006550 isoleucine catabolic process
GO:0006635 fatty acid beta-oxidation
GO:0007420 brain development
GO:0008152 metabolic process
GO:0009083 branched-chain amino acid catabolic process
GO:0009725 response to hormone
GO:0014070 response to organic cyclic compound
GO:0015936 coenzyme A metabolic process
GO:0015937 coenzyme A biosynthetic process
GO:0042594 response to starvation
GO:0046356 acetyl-CoA catabolic process
GO:0046951 ketone body biosynthetic process
GO:0046952 ketone body catabolic process
GO:0051260 protein homooligomerization
GO:0060612 adipose tissue development
GO:0072229 metanephric proximal convoluted tubule development
GO:1902224 ketone body metabolic process
GO:1902860 propionyl-CoA biosynthetic process

Cellular Component:
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  HM005511 - Homo sapiens clone HTL-T-198 testicular tissue protein Li 198 mRNA, complete cds.
D90228 - Homo sapiens mRNA for mitochondrial acetoacetyl-CoA thiolase precursor, complete cds.
AK312574 - Homo sapiens cDNA, FLJ92949, Homo sapiens acetyl-Coenzyme A acetyltransferase 1 (acetoacetyl Coenzyme A thiolase) (ACAT1), nuclear gene encoding mitochondrial protein, mRNA.
BC010942 - Homo sapiens acetyl-Coenzyme A acetyltransferase 1, mRNA (cDNA clone IMAGE:4278329), complete cds.
BC063853 - Homo sapiens acetyl-Coenzyme A acetyltransferase 1, mRNA (cDNA clone IMAGE:6182007), with apparent retained intron.
AB590491 - Synthetic construct DNA, clone: pFN21AE1240, Homo sapiens ACAT1 gene for acetyl-Coenzyme A acetyltransferase 1, without stop codon, in Flexi system.
KJ901276 - Synthetic construct Homo sapiens clone ccsbBroadEn_10670 ACAT1 gene, encodes complete protein.
KR710767 - Synthetic construct Homo sapiens clone CCSBHm_00016884 ACAT1 (ACAT1) mRNA, encodes complete protein.
KR710768 - Synthetic construct Homo sapiens clone CCSBHm_00016885 ACAT1 (ACAT1) mRNA, encodes complete protein.
KR710769 - Synthetic construct Homo sapiens clone CCSBHm_00016887 ACAT1 (ACAT1) mRNA, encodes complete protein.
KR710770 - Synthetic construct Homo sapiens clone CCSBHm_00016888 ACAT1 (ACAT1) mRNA, encodes complete protein.
JD139330 - Sequence 120354 from Patent EP1572962.
S70578 - acetoacetyl-coenzyme A thiolase {Q272STOP, exon 8} [human, GK07, Pre-mRNA Partial Mutant, 100 nt].
JD437202 - Sequence 418226 from Patent EP1572962.
JD284528 - Sequence 265552 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
ILEUDEG-PWY - L-isoleucine degradation
PWY-5177 - glutaryl-CoA degradation
PWY-5910 - superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)
PWY-8182 - valproate β-oxidation
PWY-922 - mevalonate pathway
PWY66-367 - ketogenesis
PWY66-368 - ketolysis
PWY66-401 - superpathway of L-tryptophan utilization
PWY66-5 - superpathway of cholesterol biosynthesis
TRYPTOPHAN-DEGRADATION-1 - L-tryptophan degradation (kynurenine pathway)

BioCarta from NCI Cancer Genome Anatomy Project
h_LDLpathway - Low-density lipoprotein (LDL) pathway during atherogenesis

Reactome (by CSHL, EBI, and GO)

Protein P24752 (Reactome details) participates in the following event(s):

R-HSA-70844 alpha-methyl-acetoacetyl-CoA + CoA => propionyl-CoA + acetyl-CoA
R-HSA-73916 2 acetyl-CoA <=> acetoacetyl-CoA + CoA
R-HSA-74181 acetoacetyl-CoA + CoA <=> 2 acetyl-CoA
R-HSA-70895 Branched-chain amino acid catabolism
R-HSA-77111 Synthesis of Ketone Bodies
R-HSA-77108 Utilization of Ketone Bodies
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-74182 Ketone body metabolism
R-HSA-1430728 Metabolism
R-HSA-556833 Metabolism of lipids

-  Other Names for This Gene
  Alternate Gene Symbols: ACAT, B2R6H1, ENST00000265838.1, ENST00000265838.2, ENST00000265838.3, ENST00000265838.4, ENST00000265838.5, ENST00000265838.6, ENST00000265838.7, ENST00000265838.8, G3XAB4, MAT, NM_000019, P24752, Q96FG8, THIL_HUMAN, uc317iem.1, uc317iem.2
UCSC ID: ENST00000265838.9_4
RefSeq Accession: NM_000019.4
Protein: P24752 (aka THIL_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.